Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GE023_RS01925 Genome accession   NZ_CP053789
Coordinates   360813..361883 (+) Length   356 a.a.
NCBI ID   WP_159305249.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 355813..366883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS01910 (GE023_001910) amiA 356331..358310 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  GE023_RS01915 (GE023_001915) amiC 358376..359878 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  GE023_RS01920 (GE023_001920) amiD 359878..360804 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  GE023_RS01925 (GE023_001925) amiE 360813..361883 (+) 1071 WP_159305249.1 ABC transporter ATP-binding protein Regulator
  GE023_RS01930 (GE023_001930) amiF 361876..362799 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator
  GE023_RS01935 (GE023_001935) - 363020..363970 (-) 951 Protein_332 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39609.61 Da        Isoelectric Point: 5.4604

>NTDB_id=447150 GE023_RS01925 WP_159305249.1 360813..361883(+) (amiE) [Streptococcus canis strain HL_98_2]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHGKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIIGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPEVIQDLHQKILKKMSGQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=447150 GE023_RS01925 WP_159305249.1 360813..361883(+) (amiE) [Streptococcus canis strain HL_98_2]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTTGATGTGCGGGATCGTGTTTTAACGGC
GATTCGTAACGTCTCACTGGAACTTGTCGAAGGAGAAGTGCTTGCTTTTGTAGGGGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGAATGTTAGAATCCAATGGACGCATTGCCAATGGTTCTATTGTTTATCGTGGACAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCGAAAATCCGTGGTTCAAAGATTGCGACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGTCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGCCATGGCAAGGCAA
AAGAAATGGCGCTTGATTACATGAATAAAGTAGGGATTCCAAACGCTAAAAAACGTTTTGAAGACTACCCATTTGAGTAT
TCAGGAGGAATGCGCCAACGTATTGTTATCGCAATTGCTTTAGCCTGTCGTCCAGATATTCTTATCTGTGATGAGCCTAC
AACAGCCCTTGATGTAACCATTCAAGCTCAAATCATTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATCACACATGACTTAGGTGTTGTCGCAAGTATTGCAGACAAAGTGGCTGTCATGTATGCAGGTGAAATTGTCGAA
TTCGGTACCGTTGAAGAAATTTTCTATGACCCACGCCACCCCTATACGTGGAGTCTATTGTCAAGCTTACCGCAATTAGC
TAATGAATCAGGAGAACTTTATTCCATTCCAGGAACTCCTCCATCGCTTTACTCGCCAATTATCGGAGATGCCTTTGCCC
TTCGCTCAGAATATGCTATGGTCTTGGACTTTGAAGAAACACCACCTGCTATCAGTGTTTCTGATACCCATTGGGCTAAA
ACATGGTTATTACACCCCGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGACTTGCATCAAAAAATCTTAAAGAA
GATGTCAGGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

55.493

99.719

0.553