Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GE023_RS01915 Genome accession   NZ_CP053789
Coordinates   358376..359878 (+) Length   500 a.a.
NCBI ID   WP_003046676.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 353376..364878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS01900 (GE023_001900) - 353405..354586 (-) 1182 WP_172756875.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE023_RS01905 (GE023_001905) pbp3 354762..356000 (-) 1239 WP_159305807.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE023_RS01910 (GE023_001910) amiA 356331..358310 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  GE023_RS01915 (GE023_001915) amiC 358376..359878 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  GE023_RS01920 (GE023_001920) amiD 359878..360804 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  GE023_RS01925 (GE023_001925) amiE 360813..361883 (+) 1071 WP_159305249.1 ABC transporter ATP-binding protein Regulator
  GE023_RS01930 (GE023_001930) amiF 361876..362799 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator
  GE023_RS01935 (GE023_001935) - 363020..363970 (-) 951 Protein_332 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56124.32 Da        Isoelectric Point: 10.1038

>NTDB_id=447148 GE023_RS01915 WP_003046676.1 358376..359878(+) (amiC) [Streptococcus canis strain HL_98_2]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKADYENLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPVSKKFYATRHIPIYERVWNFFSNLVVIDHPWKIQDEDNPNLARYI
RLENDKSIGWALVGSGTQHKYLVYANGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASNPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGIPASIILTIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIISLLLG
DIAMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=447148 GE023_RS01915 WP_003046676.1 358376..359878(+) (amiC) [Streptococcus canis strain HL_98_2]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCGTTAGTGTCGGTAGTTTTGGTAACGGCCTTAACATACACCATCGT
ATATACTCTAGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGACAAAAAGG
CTGATTACGAAAACTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGCAAAGAATTGAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACAACTGAAGCTACTAGTGCTAACAAGGCTATTTATGAGAAATATATTGATTCGCTTGGCAA
TGGTTGGCAGTTAAAACGCTTCCCTGTCAGCAAAAAATTCTATGCTACTCGTCATATTCCTATTTACGAACGTGTTTGGA
ACTTCTTCTCAAACCTAGTTGTTATTGACCACCCTTGGAAGATCCAAGACGAGGACAATCCTAATTTAGCCAGATATATT
CGTCTTGAAAATGATAAATCGATTGGTTGGGCTTTAGTGGGGTCAGGGACACAACACAAATACCTTGTCTATGCTAACGG
TAAGTTTCCTTATCTTCACCAAAACTTCGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGTAACATTCCAGTTC
TTCAAGTCATTTCACAAGGACAAGGTCGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTAACTAAGAAATCGTCA
GTGGATATTTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATTACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACTATTAATAATTATGTGGATCCTTCAATGATTCATAATTCATTTGTTATTGGATTCTTTGGCGTTATGT
TTTCCTATATTGTTGGTTTACCACTTGGTTTATTTATGGCTCGCTTTAAAAATACCTACTTTGACCGTTTTTCAACAGCA
ACCATGACCTTTATGCTTGCTTTACCAAGTATTGCTGTGATCTATGTTGTTCGCTTCCTAGGAAGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTTGGAGCATCTAACCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACAGTTATCTGGTTCCGTCGCTACCTTGTTGACCTTCAGGCCAGTGACTGGGTGCGTTTTGCGCGCTCAAAAGGG
TTGTCAGAATCTGAAATTTACAGAGGGCATCTCTTTAAAAATGCTATGGTCCCAATTGTGTCAGGGATTCCGGCAAGTAT
TATTCTTACCATCGGTGGAGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTGATTGATTCTA
TTAAATCAGCCAACAACTCAATGATTGTTGGATTAACCTTTATCTTTACCGTCTTGTCAATTATCTCACTCTTACTAGGA
GATATTGCTATGACACTTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598