Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPC60_RS14015 Genome accession   NZ_CP053671
Coordinates   1075330..1075734 (-) Length   134 a.a.
NCBI ID   WP_223848637.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1070330..1080734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS05465 (HPC60_00195) - 1070487..1072019 (+) 1533 WP_023189345.1 Nramp family divalent metal transporter -
  HPC60_RS05470 (HPC60_00200) - 1072121..1073089 (+) 969 WP_003130649.1 PhoH family protein -
  HPC60_RS05475 (HPC60_00205) - 1073147..1073626 (+) 480 WP_003130650.1 NUDIX hydrolase -
  HPC60_RS05480 (HPC60_00210) ybeY 1073778..1074266 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  HPC60_RS05485 (HPC60_00215) - 1074250..1074705 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  HPC60_RS05490 (HPC60_00220) - 1074719..1075297 (+) 579 WP_023189343.1 nucleotidyltransferase family protein -
  HPC60_RS14015 comFC 1075330..1075734 (-) 405 WP_223848637.1 ComF family protein Machinery gene
  HPC60_RS05500 (HPC60_00230) comFA 1075976..1077298 (-) 1323 WP_023189341.1 DEAD/DEAH box helicase Machinery gene
  HPC60_RS05505 (HPC60_00235) - 1077355..1077984 (+) 630 WP_003130660.1 YigZ family protein -
  HPC60_RS05510 (HPC60_00240) - 1078118..1078615 (+) 498 WP_023189340.1 VanZ family protein -
  HPC60_RS05515 (HPC60_00245) - 1078663..1079682 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  HPC60_RS05520 (HPC60_00250) - 1079797..1080543 (+) 747 WP_023189339.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15725.20 Da        Isoelectric Point: 9.9615

>NTDB_id=446227 HPC60_RS14015 WP_223848637.1 1075330..1075734(-) (comFC) [Lactococcus lactis subsp. lactis strain G121]
MKYYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=446227 HPC60_RS14015 WP_223848637.1 1075330..1075734(-) (comFC) [Lactococcus lactis subsp. lactis strain G121]
ATGAAATATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAGTAT
TTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

66.418

100

0.664
  comFC/cflB Streptococcus mitis SK321

45.324

100

0.47
  comFC/cflB Streptococcus mitis NCTC 12261

45.324

100

0.47
  comFC/cflB Streptococcus pneumoniae TIGR4

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae D39

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae R6

43.165

100

0.448
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373