Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MGAS1882_RS04265 Genome accession   NC_017053
Coordinates   864513..865349 (+) Length   278 a.a.
NCBI ID   WP_014407585.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS1882     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 859513..870349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS1882_RS04235 (MGAS1882_0872) - 860064..860435 (+) 372 WP_014407581.1 hypothetical protein -
  MGAS1882_RS04240 (MGAS1882_0873) - 860485..861396 (-) 912 WP_002989777.1 diacylglycerol/lipid kinase family protein -
  MGAS1882_RS04245 (MGAS1882_0874) trhA 861513..862163 (-) 651 WP_014407582.1 PAQR family membrane homeostasis protein TrhA -
  MGAS1882_RS04250 (MGAS1882_0875) - 862160..862600 (-) 441 WP_014407583.1 DUF1836 domain-containing protein -
  MGAS1882_RS04255 (MGAS1882_0876) ylqF 862819..863667 (+) 849 WP_014407584.1 ribosome biogenesis GTPase YlqF -
  MGAS1882_RS04260 (MGAS1882_0877) - 863657..864448 (+) 792 WP_002995007.1 ribonuclease HII -
  MGAS1882_RS04265 (MGAS1882_0878) dprA 864513..865349 (+) 837 WP_014407585.1 DNA-processing protein DprA Machinery gene
  MGAS1882_RS04270 (MGAS1882_0879) topA 865457..867586 (+) 2130 WP_014407586.1 type I DNA topoisomerase -
  MGAS1882_RS09265 - 867661..868518 (-) 858 Protein_809 LysR family transcriptional regulator -
  MGAS1882_RS04280 (MGAS1882_0882) - 868558..869124 (+) 567 Protein_810 PTS sugar transporter subunit IIC -
  MGAS1882_RS04285 (MGAS1882_0883) - 869139..870131 (+) 993 WP_009880715.1 D-lactate dehydrogenase -

Sequence


Protein


Download         Length: 278 a.a.        Molecular weight: 30988.94 Da        Isoelectric Point: 8.8230

>NTDB_id=44531 MGAS1882_RS04265 WP_014407585.1 864513..865349(+) (dprA) [Streptococcus pyogenes MGAS1882]
MNHFELYKLKKAGLTNKNILNILDYQEHQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQKLKMEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGKSEGCLQLIKEGATCVTSGMDILSEY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=44531 MGAS1882_RS04265 WP_014407585.1 864513..865349(+) (dprA) [Streptococcus pyogenes MGAS1882]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAGA
ACACCAGGAAAAATCGTTGTCACTTCGAGATATGGCCGTTGTTTCTGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAAATTAAAAATGGAATTTAAACAATTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCATTGAAAGAAATATACAATCCACCTGTCCTCTTGTTTTTTCAGGGAAATTTAGACCTTCTTGAGAAACCTAAATT
AGCCATTGTCGGCTCCAGACGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAATCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACCATC
GCTATTATTGGAACAGGGTTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAACTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAGGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GCCGAGGTATTCTTGTCGTTGAAGCAAAAAATCGTTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAAGGCCGA
GACATTTTTGCTGTCCCAGGAAACATTTTGGACGGGAAATCCGAAGGTTGCCTTCAGTTAATTAAAGAGGGAGCAACATG
CGTCACATCGGGCATGGATATCCTTTCAGAGTACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.626

100

0.676

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.791

100

0.608

  dprA/cilB/dalA Streptococcus mitis SK321

60.791

100

0.608

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.432

100

0.604

  dprA Lactococcus lactis subsp. cremoris KW2

57.554

100

0.576

  dprA Legionella pneumophila strain ERS1305867

42.857

85.612

0.367


Multiple sequence alignment