Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HJG54_RS00525 Genome accession   NZ_CP053586
Coordinates   209293..209658 (+) Length   121 a.a.
NCBI ID   WP_036000701.1    Uniprot ID   -
Organism   Leptolyngbya sp. NK1-12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 204293..214658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJG54_RS00515 (HJG54_00515) hmpF 205027..206766 (-) 1740 WP_316432740.1 pilus motility taxis protein HmpF -
  HJG54_RS00520 (HJG54_00520) - 207811..209112 (+) 1302 WP_316432741.1 response regulator -
  HJG54_RS00525 (HJG54_00525) pilH 209293..209658 (+) 366 WP_036000701.1 response regulator transcription factor Machinery gene
  HJG54_RS00530 (HJG54_00530) - 209780..210307 (+) 528 WP_036000703.1 chemotaxis protein CheW -
  HJG54_RS00535 (HJG54_00535) - 210354..213353 (+) 3000 WP_316432742.1 methyl-accepting chemotaxis protein -
  HJG54_RS00540 (HJG54_00540) - 213398..214183 (+) 786 WP_316432744.1 TrmH family RNA methyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13400.59 Da        Isoelectric Point: 7.1335

>NTDB_id=445265 HJG54_RS00525 WP_036000701.1 209293..209658(+) (pilH) [Leptolyngbya sp. NK1-12]
MSTVLVVEDSVAQQKMITDLLKGSGLNVTVANDGVDALEKIQGHRPDLVVLDIVMPRMNGYEVCRRLKADPKTQHVPIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=445265 HJG54_RS00525 WP_036000701.1 209293..209658(+) (pilH) [Leptolyngbya sp. NK1-12]
ATGAGTACTGTGTTAGTCGTAGAAGATAGTGTTGCCCAACAAAAAATGATCACCGATCTGCTCAAGGGCAGCGGCTTGAA
TGTCACCGTGGCCAATGATGGTGTGGATGCCTTAGAAAAAATTCAAGGACATCGCCCGGATCTTGTGGTACTCGATATTG
TCATGCCGCGCATGAATGGCTATGAAGTTTGCCGCCGACTCAAAGCCGATCCAAAGACACAGCATGTGCCCATCGTCATG
TGTTCTTCAAAAGGCGAAGAGTTCGATCGCTATTGGGGTATGAAACAAGGTGCAGATGCTTACATTGCTAAACCCTTCCA
GCCCACTGAACTAATTGGAACTGTAAAGCAACTTTTGCGAGGGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

100

0.727
  micA Streptococcus pneumoniae Cp1015

39.516

100

0.405
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  chpA Acinetobacter baumannii strain A118

39.655

95.868

0.38
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364
  pilG Acinetobacter baumannii strain A118

38.596

94.215

0.364