Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HNI00_RS18785 Genome accession   NZ_CP053540
Coordinates   4500451..4500816 (-) Length   121 a.a.
NCBI ID   WP_068508027.1    Uniprot ID   A0A6M8BD67
Organism   Thermoleptolyngbya oregonensis NK1-22     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4495451..4505816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNI00_RS18775 (HNI00_18800) - 4496881..4499796 (-) 2916 WP_316788417.1 methyl-accepting chemotaxis protein -
  HNI00_RS18780 (HNI00_18805) - 4499885..4500415 (-) 531 WP_172354585.1 chemotaxis protein CheW -
  HNI00_RS18785 (HNI00_18810) pilH 4500451..4500816 (-) 366 WP_068508027.1 response regulator transcription factor Machinery gene
  HNI00_RS18790 (HNI00_18815) - 4501087..4502400 (-) 1314 WP_420156225.1 response regulator -
  HNI00_RS18795 (HNI00_18820) - 4503157..4503354 (-) 198 WP_316788424.1 hypothetical protein -
  HNI00_RS18800 (HNI00_18825) hmpF 4503527..4505287 (+) 1761 WP_316788426.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13368.41 Da        Isoelectric Point: 4.6926

>NTDB_id=445030 HNI00_RS18785 WP_068508027.1 4500451..4500816(-) (pilH) [Thermoleptolyngbya oregonensis NK1-22]
MSRVLVVEDSVTQREMITDLLKGSGLDVTVASDGVEALEQIEGHSPDLVVLDIVMPRMNGYEVCRQIKANPKTQNIPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=445030 HNI00_RS18785 WP_068508027.1 4500451..4500816(-) (pilH) [Thermoleptolyngbya oregonensis NK1-22]
ATGAGTAGAGTTTTGGTTGTAGAAGACAGCGTGACCCAGCGGGAAATGATTACTGACCTGCTAAAAGGCAGCGGACTCGA
TGTCACCGTGGCTAGCGATGGTGTAGAAGCGCTAGAACAAATAGAAGGTCATAGCCCTGACCTAGTGGTTCTCGACATCG
TAATGCCCCGCATGAACGGATACGAGGTCTGCCGACAAATCAAAGCCAATCCCAAAACTCAAAACATCCCCGTTGTGATG
TGTTCCTCTAAAGGGGAAGAATTCGATCGCTATTGGGGCATGAAGCAGGGTGCAGATGCATACATTGCAAAGCCGTTCCA
GCCAACCGAGCTAGTGGGCACGGTCAAGCAATTGCTGCGGGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8BD67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

100

0.752
  pilG Acinetobacter baumannii strain A118

43.478

95.041

0.413
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  chpA Acinetobacter baumannii strain A118

41.379

95.868

0.397
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364