Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HNO12_RS17220 Genome accession   NZ_CP053376
Coordinates   3505481..3506866 (-) Length   461 a.a.
NCBI ID   WP_024085865.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3500481..3511866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS17185 (HNO12_17235) flgL 3500656..3501573 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HNO12_RS17190 (HNO12_17240) flgK 3501585..3503102 (-) 1518 WP_024085862.1 flagellar hook-associated protein FlgK -
  HNO12_RS17195 (HNO12_17245) - 3503118..3503600 (-) 483 WP_024085863.1 flagellar protein FlgN -
  HNO12_RS17200 (HNO12_17250) flgM 3503615..3503881 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HNO12_RS17205 (HNO12_17255) - 3503951..3504370 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  HNO12_RS17210 (HNO12_17260) comFC 3504444..3505133 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  HNO12_RS17215 (HNO12_17265) - 3505139..3505423 (-) 285 WP_003151389.1 competence protein ComFB -
  HNO12_RS17220 (HNO12_17270) comFA 3505481..3506866 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  HNO12_RS17225 (HNO12_17275) - 3506974..3507822 (-) 849 WP_024085866.1 DegV family protein -
  HNO12_RS17230 (HNO12_17280) degU 3507920..3508609 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HNO12_RS17235 (HNO12_17285) degS 3508686..3509849 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HNO12_RS17240 (HNO12_17290) - 3510072..3510719 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52491.85 Da        Isoelectric Point: 10.1310

>NTDB_id=444497 HNO12_RS17220 WP_024085865.1 3505481..3506866(-) (comFA) [Bacillus amyloliquefaciens strain WF02]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=444497 HNO12_RS17220 WP_024085865.1 3505481..3506866(-) (comFA) [Bacillus amyloliquefaciens strain WF02]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATCTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627