Detailed information NTG0044401

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O3M_RS06020
• Genome accession: NC_018650
• Coordinates: 1202580..1203572 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O104:H4 str. 2009EL-2050
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1197580..1208572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O3M_RS05990 (O3M_05840)	ispD	1197641..1198351 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O3M_RS05995 (O3M_05845)	ispF	1198351..1198830 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O3M_RS06000 (O3M_05850)	truD	1198827..1199876 (+)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
O3M_RS06005 (O3M_05855)	surE	1199857..1200618 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
O3M_RS06010 (O3M_05860)	pcm	1200612..1201238 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
O3M_RS06015 (O3M_05865)	nlpD	1201423..1202517 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
O3M_RS06020 (O3M_05870)	rpoS	1202580..1203572 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
O3M_RS06025 (O3M_05875)	-	1203693..1204100 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
O3M_RS06030 (O3M_05880)	-	1204247..1204840 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
O3M_RS06035 (O3M_05885)	-	1204840..1206267 (+)	1428	WP_000863197.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
O3M_RS06040 (O3M_05890)	-	1206278..1206514 (+)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
O3M_RS06045 (O3M_05895)	ygbN	1206554..1207918 (-)	1365	WP_000104428.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=44401 O3M_RS06020 WP_000081550.1 1202580..1203572(+) (rpoS) [Escherichia coli O104:H4 str. 2009EL-2050]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=44401 O3M_RS06020 WP_000081550.1 1202580..1203572(+) (rpoS) [Escherichia coli O104:H4 str. 2009EL-2050]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715