Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IUD25_RS02345 Genome accession   NZ_CP064328
Coordinates   551418..552938 (+) Length   506 a.a.
NCBI ID   WP_004090148.1    Uniprot ID   B2I8J6
Organism   Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 546418..557938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD25_RS02315 (IUD25_02315) rpsM 547349..547705 (+) 357 WP_004090134.1 30S ribosomal protein S13 -
  IUD25_RS02320 (IUD25_02320) rpsK 547721..548113 (+) 393 WP_004090135.1 30S ribosomal protein S11 -
  IUD25_RS02325 (IUD25_02325) rpsD 548128..548754 (+) 627 WP_004090136.1 30S ribosomal protein S4 -
  IUD25_RS02330 (IUD25_02330) rpoA 548809..549807 (+) 999 WP_004090142.1 DNA-directed RNA polymerase subunit alpha -
  IUD25_RS02335 (IUD25_02335) rplQ 549939..550319 (+) 381 WP_004090145.1 50S ribosomal protein L17 -
  IUD25_RS02340 (IUD25_02340) - 551147..551407 (+) 261 WP_004086547.1 accessory factor UbiK family protein -
  IUD25_RS02345 (IUD25_02345) comM 551418..552938 (+) 1521 WP_004090148.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IUD25_RS02350 (IUD25_02350) - 554171..554380 (+) 210 WP_012382465.1 hypothetical protein -
  IUD25_RS02355 (IUD25_02355) - 555386..556519 (+) 1134 WP_012382466.1 triacylglycerol lipase -
  IUD25_RS02360 (IUD25_02360) - 556520..557581 (+) 1062 WP_011097653.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54556.68 Da        Isoelectric Point: 8.2048

>NTDB_id=442654 IUD25_RS02345 WP_004090148.1 551418..552938(+) (comM) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKSDVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGVQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGLDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDSRTLQYNRQAGLNAHLGQAATERHCCLDATDQRLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=442654 IUD25_RS02345 WP_004090148.1 551418..552938(+) (comM) [Xylella fastidiosa subsp. fastidiosa strain Bakersfield-14]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCCCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGCCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGCGGTCAACTGCCACTTGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGCACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGATTCGAAGTTAAGTCTGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGCGGTAAAACTCTTTTAGCCTCAAGATTGCCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGCGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGTACAGGCACGTCCTGGTGAGATCTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGCAAAACCTTGGAAGCCTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTAGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTTTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCGTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGCCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTTACTGATTCCAGGACTTTGCAATATAATCGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGCCACCGACCAGCGTTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACCATTGCCGATTTGGATGGT
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTTGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I8J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

53.8

98.814

0.532
  comM Vibrio cholerae strain A1552

53.8

98.814

0.532
  comM Vibrio campbellii strain DS40M4

53.6

98.814

0.53
  comM Acinetobacter baylyi ADP1

53.32

98.221

0.524
  comM Haemophilus influenzae Rd KW20

52.286

99.407

0.52
  comM Glaesserella parasuis strain SC1401

51.881

99.802

0.518
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.275

100

0.439