Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IRJ26_RS14670 Genome accession   NZ_CP064094
Coordinates   2823575..2824270 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain N1108-5at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2818575..2829270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS14650 folC 2819506..2820798 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IRJ26_RS14655 comC 2820938..2821684 (+) 747 WP_010886586.1 A24 family peptidase Machinery gene
  IRJ26_RS14660 spoIIB 2821818..2822816 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  IRJ26_RS14665 maf 2822969..2823538 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IRJ26_RS14670 ysxA/radC 2823575..2824270 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  IRJ26_RS14675 mreB 2824362..2825375 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IRJ26_RS14680 mreC 2825406..2826278 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  IRJ26_RS14685 mreD 2826275..2826793 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  IRJ26_RS14690 minC 2826846..2827526 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  IRJ26_RS14695 minD 2827528..2828334 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=441924 IRJ26_RS14670 WP_003246034.1 2823575..2824270(+) (ysxA/radC) [Bacillus subtilis strain N1108-5at]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=441924 IRJ26_RS14670 WP_003246034.1 2823575..2824270(+) (ysxA/radC) [Bacillus subtilis strain N1108-5at]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424