Detailed information NTG0441922

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HKK52_RS25290
• Genome accession: NZ_CP052862
• Coordinates: 5496862..5497734 (-)
• Length: 290 a.a.
• NCBI ID: WP_169373028.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADAK2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5491862..5502734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKK52_RS25250 (HKK52_25250)	-	5492195..5493493 (-)	1299	WP_169373024.1	NAD(P)/FAD-dependent oxidoreductase	-
HKK52_RS25255 (HKK52_25255)	-	5493554..5493727 (-)	174	WP_054051322.1	DUF3094 family protein	-
HKK52_RS25260 (HKK52_25260)	-	5493782..5494309 (-)	528	WP_169373025.1	MOSC domain-containing protein	-
HKK52_RS25265 (HKK52_25265)	-	5494306..5494932 (-)	627	WP_008154887.1	DUF1780 domain-containing protein	-
HKK52_RS25270 (HKK52_25270)	-	5495067..5495756 (+)	690	WP_169373026.1	energy-coupling factor ABC transporter permease	-
HKK52_RS25275 (HKK52_25275)	-	5495820..5496035 (+)	216	WP_008033212.1	hypothetical protein	-
HKK52_RS25280 (HKK52_25280)	yacG	5496045..5496245 (-)	201	WP_149661048.1	DNA gyrase inhibitor YacG	-
HKK52_RS25285 (HKK52_25285)	coaE	5496242..5496865 (-)	624	WP_169373027.1	dephospho-CoA kinase	-
HKK52_RS25290 (HKK52_25290)	pilD	5496862..5497734 (-)	873	WP_169373028.1	A24 family peptidase	Machinery gene
HKK52_RS25295 (HKK52_25295)	pilC	5497736..5498953 (-)	1218	WP_169373029.1	type II secretion system F family protein	Machinery gene
HKK52_RS25300 (HKK52_25300)	pilB	5498956..5500656 (-)	1701	WP_169373030.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HKK52_RS25305 (HKK52_25305)	-	5500882..5501283 (+)	402	WP_169373031.1	pilin	-
HKK52_RS25310 (HKK52_25310)	-	5501615..5501965 (+)	351	WP_169373032.1	BON domain-containing protein	-
HKK52_RS25315 (HKK52_25315)	-	5502134..5502430 (-)	297	WP_169373033.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32296.75 Da
• Isoelectric Point: 8.3494

>NTDB_id=441922 HKK52_RS25290 WP_169373028.1 5496862..5497734(-) (pilD) [Pseudomonas sp. ADAK2]
MPLIDYLTLYPLAFVIFALVLGLVIGSFLNVVVWRLPKMLEREWRVQAHDVLGLPSETPLPTYNLMLPHSQCPHCAHRIR
AWENIPVLSYLLLRGRCSNCAASISKRYPLTELACGLLSAFVAWHFGFGWPGGLMLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVIGYMALWSVFWLFKLITGKDGIGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AMLGVILLRLRNAKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=441922 HKK52_RS25290 WP_169373028.1 5496862..5497734(-) (pilD) [Pseudomonas sp. ADAK2]
ATGCCCTTGATCGACTACTTGACCCTCTATCCGCTGGCCTTCGTGATCTTTGCGCTGGTGCTCGGCCTGGTGATCGGCAG
CTTCCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTCGAACGGGAATGGCGAGTGCAGGCCCACGATGTTCTGGGCT
TGCCCAGTGAAACGCCACTGCCGACCTATAACCTGATGCTGCCCCATTCCCAGTGCCCGCACTGCGCCCACCGGATCCGT
GCCTGGGAAAACATTCCAGTGCTCAGCTATCTGTTGCTGCGCGGTCGCTGTTCGAACTGCGCCGCATCGATCAGCAAGCG
CTACCCACTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCGTCGCCTGGCATTTCGGTTTCGGCTGGCCTGGCGGCC
TGATGCTGGTACTGACTTGGGGCCTGTTGGCCATGAGCCTGATCGATGCCGAGCATCAACTGTTACCCGACGTGCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCCTTGCACGATGCCTTGTGGGGTGCGGT
GATCGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGCCATGGCGACT
TCAAGCTGTTGGCGATGCTGGGGGCCTGGGGCGGTTGGCAGATCCTGCCGCTGACCATCCTCCTGTCATCGCTGGTGGGG
GCGATGCTCGGGGTGATTTTGCTGCGCTTGCGGAACGCGAAAACCTCCACGCCGATTCCCTTCGGTCCCTATCTGGCAAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.53	97.586	0.493
pilD	Vibrio cholerae strain A1552	50.177	97.586	0.49
pilD	Acinetobacter baumannii D1279779	48.592	97.931	0.476
pilD	Acinetobacter nosocomialis M2	47.887	97.931	0.469
pilD	Neisseria gonorrhoeae MS11	50	92.414	0.462