Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H9J98_RS16350 Genome accession   NZ_CP064041
Coordinates   3484855..3486378 (-) Length   507 a.a.
NCBI ID   WP_222133800.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain XMO116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3479855..3491378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS16330 (H9J98_16210) - 3481137..3482123 (+) 987 WP_025516177.1 serine/threonine protein kinase -
  H9J98_RS16335 (H9J98_16215) - 3482158..3482760 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  H9J98_RS16340 (H9J98_16220) - 3482802..3483680 (-) 879 WP_020839879.1 acyltransferase -
  H9J98_RS16345 (H9J98_16225) - 3483842..3484798 (+) 957 WP_222133799.1 DUF2860 domain-containing protein -
  H9J98_RS16350 (H9J98_16230) comM 3484855..3486378 (-) 1524 WP_222133800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H9J98_RS16355 (H9J98_16235) ilvG 3486843..3488489 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  H9J98_RS16360 (H9J98_16240) ilvM 3488500..3488784 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  H9J98_RS16365 (H9J98_16245) ilvE 3488797..3489735 (+) 939 WP_176296820.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55034.12 Da        Isoelectric Point: 8.7691

>NTDB_id=441450 H9J98_RS16350 WP_222133800.1 3484855..3486378(-) (comM) [Vibrio parahaemolyticus strain XMO116]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFIGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLRDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=441450 H9J98_RS16350 WP_222133800.1 3484855..3486378(-) (comM) [Vibrio parahaemolyticus strain XMO116]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTAT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGTGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACGAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGAGGCTCGGTGCCAAGACCAGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAGCCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCGCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGTACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACAGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGTGAGAGCATGCTCAATCGAAACGGCAAAGTCAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTACATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCTCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGTTCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.813

100

0.848
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  comM Acinetobacter baylyi ADP1

49.699

98.422

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442