Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HHK01_RS09735 Genome accession   NZ_CP052135
Coordinates   1979295..1980977 (-) Length   560 a.a.
NCBI ID   WP_170007609.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1974295..1985977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS09715 - 1975658..1975909 (+) 252 WP_170007605.1 DUF2627 domain-containing protein -
  HHK01_RS09720 - 1975956..1976699 (-) 744 WP_170007606.1 glycerophosphodiester phosphodiesterase -
  HHK01_RS09725 spo0A 1976762..1977553 (-) 792 WP_170007607.1 sporulation transcription factor Spo0A Regulator
  HHK01_RS09730 spoIVB 1977837..1979117 (-) 1281 WP_170007608.1 SpoIVB peptidase -
  HHK01_RS09735 recN 1979295..1980977 (-) 1683 WP_170007609.1 DNA repair protein RecN Machinery gene
  HHK01_RS09740 ahrC 1980993..1981445 (-) 453 WP_170007610.1 transcriptional regulator AhrC/ArgR -
  HHK01_RS09745 - 1981707..1982558 (-) 852 WP_170007611.1 TlyA family RNA methyltransferase -
  HHK01_RS09750 dxs 1982558..1984453 (-) 1896 WP_170007612.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HHK01_RS09755 - 1984465..1985070 (-) 606 WP_170007613.1 hypothetical protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63318.60 Da        Isoelectric Point: 4.9709

>NTDB_id=441446 HHK01_RS09735 WP_170007609.1 1979295..1980977(-) (recN) [Bacillus fonticola strain CS13]
MLGQLSIKDFAIIDELTVSFQEGLTALTGETGAGKSIVIDAILLLAGRRGSQDFVRHGTDKAELEGLFYVDPKHPVLNRL
QEFGLPIDEEMLVIRRDLFATGKSVCRINGKLVTISTLREVGQSLLDVHGQHDTQQLLDRKHHLTLLDSFGSEKLFEAKR
TYGETYRTYVSVKRKLADLSRNEQETAQRLDILKYQADELSGANLQLGEEEALLQERDQLANYEQLYKGLQAAYDALQGE
QKGLDWVGLSLSQLEHVQSVSDTYKSTYNKVADAFYTLEEECSTIRHLLDDLVYDENRLNEVESRLAELQRLEKKYGPTV
EEMLEYASKIEEELESLENRESHIARFQKELADVEEELVLEAQVLHAERNRCARALTEQVHAHLQDLYMERTRIEVQFEK
RSGSNEFQADGAYTCDILFSANLGEPLKPLSKVASGGELSRFMLALKLVFRQHQAAVSILFDEVDTGVSGRVAQAMADKI
SYLASFGQVLCITHLPQVAARANCHYLIQKAYRDKRTYTTISPLSKTDRVEEIARMMSGADVTKATKDHAKELLETTLYV

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=441446 HHK01_RS09735 WP_170007609.1 1979295..1980977(-) (recN) [Bacillus fonticola strain CS13]
ATGTTAGGACAATTGTCCATTAAGGATTTTGCCATAATTGATGAATTGACGGTTTCGTTTCAAGAGGGTCTGACGGCATT
AACTGGTGAAACCGGTGCAGGTAAATCCATCGTAATAGATGCTATTTTACTGCTAGCAGGAAGAAGAGGCTCTCAAGACT
TTGTTCGTCATGGTACAGACAAAGCAGAATTAGAAGGTCTTTTTTACGTCGATCCGAAACATCCTGTCTTGAACCGTTTG
CAAGAATTTGGTCTTCCAATTGACGAAGAGATGCTTGTGATAAGACGAGATCTCTTTGCTACAGGGAAAAGTGTGTGTCG
CATTAATGGCAAGCTTGTCACCATTTCCACCTTACGTGAAGTGGGTCAAAGTCTGCTTGATGTTCATGGGCAACACGATA
CGCAGCAGCTTCTTGACCGAAAACACCATCTAACCTTGTTAGATTCATTCGGTTCTGAGAAACTATTCGAAGCGAAGCGT
ACATACGGTGAGACGTATCGAACGTATGTGAGTGTGAAGCGAAAGCTTGCTGATTTATCAAGAAACGAACAAGAAACAGC
ACAGCGTCTTGATATTTTAAAATATCAAGCTGACGAGCTTAGTGGAGCGAACCTGCAGCTTGGAGAAGAAGAGGCTTTGC
TGCAAGAAAGAGATCAGTTAGCTAACTACGAACAACTATATAAAGGGTTGCAGGCTGCTTATGATGCGTTGCAAGGGGAA
CAAAAAGGGTTGGATTGGGTCGGGTTGTCTCTTTCCCAGTTGGAACATGTCCAGTCCGTTTCCGATACGTATAAAAGCAC
GTATAATAAAGTGGCGGACGCCTTTTACACTTTAGAGGAAGAATGCTCAACGATTCGACATTTGTTAGACGATCTTGTTT
ATGATGAAAATAGGCTAAATGAAGTGGAAAGTCGCTTGGCAGAATTACAGCGCCTTGAAAAAAAATATGGTCCAACTGTA
GAAGAAATGCTAGAGTATGCTTCAAAGATTGAAGAAGAGTTAGAGTCGCTTGAAAATCGAGAAAGTCATATTGCTCGCTT
TCAAAAGGAATTAGCGGATGTCGAAGAAGAGCTCGTCTTAGAAGCACAAGTCCTTCATGCAGAGCGAAACCGGTGTGCAC
GAGCGCTAACAGAACAAGTACACGCTCACCTCCAGGATCTCTATATGGAAAGAACACGTATTGAAGTCCAGTTTGAGAAG
CGATCAGGAAGTAACGAGTTCCAAGCGGATGGCGCATATACGTGTGATATTTTGTTTAGTGCGAACCTTGGAGAGCCATT
AAAGCCCTTGTCAAAAGTAGCGTCGGGGGGTGAACTGTCGCGGTTCATGTTGGCGTTAAAACTTGTGTTCCGTCAGCATC
AGGCAGCGGTATCCATTCTTTTTGACGAAGTAGATACTGGGGTAAGTGGGCGAGTAGCACAAGCAATGGCGGATAAAATT
AGTTACCTCGCCTCGTTTGGTCAAGTGCTTTGTATTACCCACCTTCCTCAAGTAGCAGCACGTGCTAACTGTCATTACTT
GATTCAAAAGGCGTATAGAGATAAAAGAACGTATACAACGATTTCGCCACTTTCTAAAACCGATCGAGTCGAAGAAATTG
CCCGTATGATGAGTGGTGCTGATGTAACAAAAGCGACGAAGGATCATGCGAAGGAACTTTTGGAAACCACTTTATACGTA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.499

100

0.521