Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HIN88_RS01500 Genome accession   NZ_CP051866
Coordinates   322968..323495 (+) Length   175 a.a.
NCBI ID   WP_024436689.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317968..328495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS01485 (HIN88_01485) pilM 320521..321579 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HIN88_RS01490 (HIN88_01490) pilN 321579..322220 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  HIN88_RS01495 (HIN88_01495) pilO 322217..322957 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HIN88_RS01500 (HIN88_01500) pilP 322968..323495 (+) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  HIN88_RS01505 (HIN88_01505) pilQ 323558..325723 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  HIN88_RS01510 (HIN88_01510) aroK 325735..326304 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HIN88_RS01515 (HIN88_01515) aroB 326333..327415 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -
  HIN88_RS01520 (HIN88_01520) - 327431..328306 (+) 876 WP_000218808.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19433.66 Da        Isoelectric Point: 8.9898

>NTDB_id=441165 HIN88_RS01500 WP_024436689.1 322968..323495(+) (pilP) [Acinetobacter baumannii strain Ab-C63]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=441165 HIN88_RS01500 WP_024436689.1 322968..323495(+) (pilP) [Acinetobacter baumannii strain Ab-C63]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714