Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HHJ56_RS07790 Genome accession   NZ_CP051642
Coordinates   1671666..1673090 (-) Length   474 a.a.
NCBI ID   WP_035687022.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666666..1678090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS07765 (HHJ56_07765) - 1666993..1667856 (-) 864 WP_035687012.1 phosphatidate cytidylyltransferase -
  HHJ56_RS07770 (HHJ56_07770) uppS 1667860..1668588 (-) 729 WP_035687015.1 polyprenyl diphosphate synthase -
  HHJ56_RS07775 (HHJ56_07775) ispC 1668742..1669938 (-) 1197 WP_035687018.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  HHJ56_RS07780 (HHJ56_07780) frr 1670118..1670675 (-) 558 WP_017807054.1 ribosome recycling factor -
  HHJ56_RS07785 (HHJ56_07785) pyrH 1670700..1671416 (-) 717 WP_035687020.1 UMP kinase -
  HHJ56_RS07790 (HHJ56_07790) pilB 1671666..1673090 (-) 1425 WP_035687022.1 GspE/PulE family protein Machinery gene
  HHJ56_RS07795 (HHJ56_07795) pilA 1673103..1673534 (-) 432 WP_035687024.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HHJ56_RS07800 (HHJ56_07800) ampD 1673674..1674228 (+) 555 WP_035687059.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HHJ56_RS07805 (HHJ56_07805) - 1674327..1674746 (+) 420 WP_124994872.1 hypothetical protein -
  HHJ56_RS07810 (HHJ56_07810) rppH 1675318..1675911 (+) 594 WP_035687029.1 RNA pyrophosphohydrolase -
  HHJ56_RS07815 (HHJ56_07815) - 1675914..1676705 (+) 792 WP_035687031.1 sulfite exporter TauE/SafE family protein -
  HHJ56_RS07820 (HHJ56_07820) lgt 1676715..1677515 (+) 801 WP_035687035.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53762.51 Da        Isoelectric Point: 5.2146

>NTDB_id=440176 HHJ56_RS07790 WP_035687022.1 1671666..1673090(-) (pilB) [Avibacterium paragallinarum strain ADL-AP01]
MAEYSLDEDDIVYAVDGKCFEITPHLWQQNKQQKDILIRYLAVPLQEDEHTLWLGIDDLTNLSACESFSFLTGKIVEPIL
LSEQDLKSLLQKLSPTLVEEPALLDFYQSSISPYSENQPEKLDEPIIQILNKVFESAMQLNASDIHLEPQNEQLQIRFRI
DGVLQHQPPISKQMSQRLISRLKLLARLDLSETRLPQDGRFHFKTTFSDILDFRISTLPTYYGEKAVLRLQKNKPVTLDF
SELGMTAIQRKTLQDALSQPQGLILVTGPTGSGKSITLYTALEWLNQSEKHILTAEDPIEIELPGIIQTQINPQIGLDFN
RLLRTFLRQDPDIIMLGEIRDAESAAIALRAAQTGHLVLSTLHTNNAHSAIARLLQLGIQQYEIESCLLLVIAQRLVRKK
CLHKTKNCECYQGYSGRTGIYQFLQAIFDSNTGQISYQTDYPSLWDSASHKIAQGITDIAELERVLGRHTKAEL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=440176 HHJ56_RS07790 WP_035687022.1 1671666..1673090(-) (pilB) [Avibacterium paragallinarum strain ADL-AP01]
ATGGCTGAGTATTCTTTAGACGAGGACGACATTGTATATGCTGTTGATGGAAAATGCTTTGAAATAACACCGCACTTATG
GCAACAGAATAAGCAGCAAAAAGATATTTTAATACGTTATTTAGCAGTACCTTTACAGGAGGATGAACATACACTTTGGC
TTGGTATTGATGACTTAACAAATCTATCGGCTTGTGAAAGTTTTTCATTTCTAACAGGAAAAATAGTTGAGCCGATTTTG
TTATCAGAACAAGATTTAAAATCGCTATTACAGAAGTTATCTCCCACATTAGTAGAAGAGCCGGCATTACTTGATTTTTA
TCAATCGTCTATTTCACCTTATAGCGAAAATCAACCAGAAAAACTTGATGAACCAATTATTCAAATACTAAATAAAGTTT
TTGAATCGGCAATGCAATTAAATGCCTCAGATATTCATTTAGAGCCACAAAATGAGCAATTGCAGATCCGTTTTCGTATT
GACGGGGTATTGCAACATCAGCCTCCTATTTCTAAACAAATGAGCCAACGTTTGATTTCTCGTTTAAAACTTCTAGCTCG
TCTTGATCTTAGCGAAACTCGCTTACCACAAGATGGAAGATTTCATTTCAAAACGACATTTTCCGATATATTAGACTTCC
GTATATCGACATTACCTACATATTATGGAGAAAAAGCGGTACTACGTTTACAAAAAAATAAACCTGTTACCTTGGATTTT
TCTGAGCTGGGGATGACAGCGATACAACGAAAAACATTACAAGATGCTTTATCTCAACCTCAAGGACTCATTTTAGTAAC
GGGGCCAACTGGGAGTGGGAAAAGTATTACGCTCTATACAGCATTAGAATGGCTTAATCAATCGGAAAAACATATTCTAA
CAGCAGAAGATCCGATTGAAATAGAACTTCCAGGGATTATCCAAACGCAAATTAACCCACAAATTGGTTTAGATTTTAAC
CGTTTGTTGCGTACATTTTTACGTCAGGATCCAGACATTATTATGCTTGGTGAGATCCGTGATGCAGAAAGTGCAGCGAT
TGCGTTACGTGCAGCACAAACTGGACATTTAGTCCTTTCAACATTACATACAAATAATGCACATTCAGCTATTGCTCGCT
TGTTACAGCTTGGTATTCAACAATATGAAATTGAAAGTTGTTTATTATTAGTGATTGCCCAGCGTTTAGTCCGTAAAAAA
TGTCTACACAAAACGAAAAATTGCGAATGTTATCAAGGTTATAGTGGGCGTACTGGTATTTATCAATTTTTACAAGCTAT
TTTTGATTCAAATACAGGGCAAATTTCTTATCAAACCGATTATCCCTCATTATGGGATAGTGCTTCACATAAAATAGCAC
AAGGTATCACAGATATTGCTGAATTAGAACGAGTTTTAGGTAGGCATACAAAAGCTGAACTATAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(132-399)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(17-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Haemophilus influenzae Rd KW20

64.693

99.789

0.646
  pilB Haemophilus influenzae 86-028NP

63.924

100

0.639
  pilB Glaesserella parasuis strain SC1401

57.263

100

0.574
  pilB Legionella pneumophila strain ERS1305867

39.634

100

0.411
  pilB Vibrio campbellii strain DS40M4

40.206

100

0.411
  pilB Vibrio parahaemolyticus RIMD 2210633

39.794

100

0.407
  pilB Vibrio cholerae strain A1552

39.419

100

0.401
  pilB Acinetobacter baylyi ADP1

37.626

100

0.395
  pilF Neisseria gonorrhoeae MS11

37.317

100

0.376
  pilB Acinetobacter baumannii D1279779

36.495

100

0.373