Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   YYK_RS00755 Genome accession   NC_018526
Coordinates   116002..116409 (+) Length   135 a.a.
NCBI ID   WP_011921721.1    Uniprot ID   A0A0H3MT39
Organism   Streptococcus suis S735     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111002..121409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YYK_RS00730 (YYK_00540) - 112410..112775 (+) 366 WP_002936568.1 DUF1033 family protein -
  YYK_RS00735 (YYK_00550) - 112810..113753 (-) 944 Protein_106 S66 family peptidase -
  YYK_RS00740 (YYK_00555) comGA 113839..114789 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  YYK_RS00745 (YYK_00560) comGB 114701..115738 (+) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  YYK_RS00750 (YYK_00565) comGC 115740..116021 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  YYK_RS00755 (YYK_00570) comGD 116002..116409 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD Machinery gene
  YYK_RS00760 (YYK_00575) comGE 116381..116674 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  YYK_RS00765 (YYK_00580) comGF/cglF 116661..117095 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  YYK_RS00770 (YYK_00585) comGG 117073..117483 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG Machinery gene
  YYK_RS00775 (YYK_00590) comGH 117540..118493 (+) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  YYK_RS00780 (YYK_00595) - 118543..119730 (+) 1188 WP_012775473.1 acetate kinase -
  YYK_RS00785 (YYK_00600) - 120044..120595 (+) 552 WP_012775474.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15367.59 Da        Isoelectric Point: 8.3926

>NTDB_id=43948 YYK_RS00755 WP_011921721.1 116002..116409(+) (comGD) [Streptococcus suis S735]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHKKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEEKTIQFEEDGGNSSLTKIRFHLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=43948 YYK_RS00755 WP_011921721.1 116002..116409(+) (comGD) [Streptococcus suis S735]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTAGCAGCCAGTTCCCACAAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTCTTAGAGGAGAAAACTATTCAGTTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCACCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae R6

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae Rx1

44.961

95.556

0.43
  comGD/cglD Streptococcus pneumoniae D39

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.186

95.556

0.422
  comGD/cglD Streptococcus mitis SK321

43.411

95.556

0.415
  comGD Lactococcus lactis subsp. cremoris KW2

39.062

94.815

0.37

Multiple sequence alignment