Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBAL678_RS44345 Genome accession   NC_016901
Coordinates   4837793..4839319 (+) Length   508 a.a.
NCBI ID   WP_012197735.1    Uniprot ID   A9L629
Organism   Shewanella baltica OS678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4832793..4844319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL678_RS44335 (Sbal678_4167) - 4834402..4836186 (-) 1785 WP_006084443.1 GGDEF domain-containing protein -
  SBAL678_RS44340 (Sbal678_4168) - 4836232..4837260 (-) 1029 WP_012197734.1 ABC transporter substrate-binding protein -
  SBAL678_RS44345 (Sbal678_4169) comM 4837793..4839319 (+) 1527 WP_012197735.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBAL678_RS44350 (Sbal678_4170) - 4839429..4840325 (+) 897 WP_006084446.1 acyltransferase -
  SBAL678_RS44355 (Sbal678_4171) - 4840339..4841283 (+) 945 WP_006084447.1 acyltransferase -
  SBAL678_RS44360 (Sbal678_4172) - 4841302..4841796 (-) 495 WP_012197736.1 DUF523 domain-containing protein -
  SBAL678_RS44365 (Sbal678_4173) - 4842106..4842873 (+) 768 WP_006084449.1 GntR family transcriptional regulator -
  SBAL678_RS44370 (Sbal678_4174) prpB 4842926..4843804 (+) 879 WP_006084450.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55485.81 Da        Isoelectric Point: 8.3615

>NTDB_id=43952 SBAL678_RS44345 WP_012197735.1 4837793..4839319(+) (comM) [Shewanella baltica OS678]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALFNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKRARELQLARAGVLNSELTGKQLKRFSGISDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=43952 SBAL678_RS44345 WP_012197735.1 4837793..4839319(+) (comM) [Shewanella baltica OS678]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCCCAAGTCACAGTTGAAGTGCATCTCAGTAA
CGGCTTACCGGCATTTAATCTAGTGGGATTACCCGAAGCGTCGGTGAAAGAAGCCCGCGAGCGGGTGCGCAGCGCACTGT
TCAATGCAGGATTCGAGTTTCCGATGCGGCGGATAACCGTTAACCTTGCGCCAGCAGATTTACCTAAACAAGGTGGTCGC
TACGATTTACCCATAGCCGTGGGCATATTGGCCGCCTCGGAACAAATCCCTGCTAATAGTTTAAAAAATCTTGAGTTTGT
CGGTGAGCTGGCACTGTCTGGGCACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCCGCTAAGCGCCAAGACC
ATACCTTGATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCACCTT
CAGAGCTTAGCCGCTTATTTACAGGGGCAAAATCAGCTGCCGACGTTAGCGCCGCAATTAGAATGGATCAGCCAAGAGAC
GCCTGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCTGCGGGGA
ACCATAACCTCCTGATGCTTGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCCGCG
CTCAATTATGAGGAAGCATTAGAAGTGGCGGCGATTCATTCCGTTGCCGGACTCGACATTAAGCCGCAGCATTTTTTGCA
GCGACCCTTTCGCTCGCCACACCACACAAGTTCGTCGATATCCCTCGTGGGCGGTGGCAGTATTCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCTCGAAAAGTCTTAGATTGCCTGCGCGAG
CCGATGGAGACAGGTGAGGTGGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAATTGATCGCGGC
AATGAATCCCAGCCCGAGCGGTGATATTGATAGCCAACACAGATCGAGCCCCGAACAGATTCAACGTTATCTCTCAAGGC
TTTCAGGCCCATTTCTCGACCGCTTCGATTTAACCATTGAAGTGCCCAAACTCCCCGCGGGTACCTTGACTCAAGCCGCG
CCGCAAACAGAAACCAGCCAAGATATCGCCAAGCGAGTGAAACGAGCGCGTGAGCTGCAACTCGCCCGCGCTGGCGTGCT
CAATAGCGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGGATCAGTGACGCTGATTTAGTGTTTTTGGAGCAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGTTTTCATCGTATACAAAGAGTCGCGCGAACTATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9L629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.275

100

0.565
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

55.206

100

0.553
  comM Legionella pneumophila str. Paris

45.669

100

0.457
  comM Legionella pneumophila strain ERS1305867

45.669

100

0.457
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.952

97.638

0.429

Multiple sequence alignment