Detailed information NTG0439280

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG562_RS00195
• Genome accession: NZ_CP051505
• Coordinates: 34471..35526 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786694.1
• Uniprot ID: A0AAE7PKX6
• Organism: Helicobacter pylori strain SHIM-010
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29471..40526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG562_RS00165 (HG562_00165)	-	29901..30314 (+)	414	WP_001023005.1	universal stress protein	-
HG562_RS00170 (HG562_00170)	-	30329..30604 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HG562_RS00175 (HG562_00175)	-	30604..32826 (+)	2223	WP_001051544.1	ATP-dependent Clp protease ATP-binding subunit	-
HG562_RS00180 (HG562_00180)	panD	32816..33166 (+)	351	WP_000142269.1	aspartate 1-decarboxylase	-
HG562_RS00185 (HG562_00185)	-	33177..33470 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG562_RS00190 (HG562_00190)	-	33470..34465 (+)	996	WP_000468441.1	PDZ domain-containing protein	-
HG562_RS00195 (HG562_00195)	comB6	34471..35526 (+)	1056	WP_000786694.1	P-type conjugative transfer protein TrbL	Machinery gene
HG562_RS00200 (HG562_00200)	comB7	35542..35655 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HG562_RS00205 (HG562_00205)	comB8	35652..36395 (+)	744	WP_000660502.1	virB8 family protein	Machinery gene
HG562_RS00210 (HG562_00210)	comB9	36395..37351 (+)	957	WP_014662053.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG562_RS00215 (HG562_00215)	comB10	37344..38480 (+)	1137	WP_001045868.1	DNA type IV secretion system protein ComB10	Machinery gene
HG562_RS00220 (HG562_00220)	-	38552..39964 (+)	1413	WP_000694836.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39689.63 Da
• Isoelectric Point: 9.0413

>NTDB_id=439280 HG562_RS00195 WP_000786694.1 34471..35526(+) (comB6) [Helicobacter pylori strain SHIM-010]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMSGGVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439280 HG562_RS00195 WP_000786694.1 34471..35526(+) (comB6) [Helicobacter pylori strain SHIM-010]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGGAGGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972