Detailed information NTG0439276

Bioinformatically predicted

Overview

• Name: comH
• Type: Machinery gene
• Locus tag: HG563_RS07290
• Genome accession: NZ_CP051504
• Coordinates: 1526731..1528170 (-)
• Length: 479 a.a.
• NCBI ID: WP_202273408.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain SHIM-011
• Function: import of DNA into the periplasm (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1521731..1533170

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG563_RS07265 (HG563_07265)	recG	1522868..1524739 (-)	1872	WP_001158379.1	ATP-dependent DNA helicase RecG	-
HG563_RS07270 (HG563_07270)	-	1524821..1525165 (+)	345	WP_000836985.1	hypothetical protein	-
HG563_RS07275 (HG563_07275)	-	1525169..1525804 (+)	636	WP_000668049.1	outer membrane protein	-
HG563_RS07280 (HG563_07280)	-	1525801..1526553 (-)	753	WP_000780314.1	exodeoxyribonuclease III	-
HG563_RS07290 (HG563_07290)	comH	1526731..1528170 (-)	1440	WP_202273408.1	competence protein	Machinery gene
HG563_RS07295 (HG563_07295)	dnaA	1528399..1529766 (-)	1368	WP_000380595.1	chromosomal replication initiator protein DnaA	-
HG563_RS07300 (HG563_07300)	-	1529919..1530461 (+)	543	WP_202273690.1	purine-nucleoside phosphorylase	-
HG563_RS07305 (HG563_07305)	-	1530497..1530736 (+)	240	WP_202273409.1	DUF2443 domain-containing protein	-
HG563_RS07310 (HG563_07310)	glmS	1530737..1532530 (+)	1794	WP_000334330.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-

Sequence

Protein

• Length: 479 a.a.
• Molecular weight: 54983.02 Da
• Isoelectric Point: 7.1642

>NTDB_id=439276 HG563_RS07290 WP_202273408.1 1526731..1528170(-) (comH) [Helicobacter pylori strain SHIM-011]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLSPNRPTIPRNTQIVFSSKELKELHPHQMPSLNAPIQKPQNKPTPSQQSLQNFSYPESKLDSKNPKNSLLQPL
ATLNKTSLANEVKTPTNDTKPPLKHSSQDQENNLFVTPPTEKTLPNNTPNADINEHNESNENRDNAQKQAVRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVQKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITRNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide

• Length: 1440 bp

>NTDB_id=439276 HG563_RS07290 WP_202273408.1 1526731..1528170(-) (comH) [Helicobacter pylori strain SHIM-011]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAGCCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCTACACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTCCATCGC
AACAATCTCTTCAAAACTTTTCTTACCCAGAGTCCAAACTAGACTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCTTAATAAAACAAGCCTTGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
ACAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ACGAACACAATGAAAGCAATGAGAATAGGGATAATGCGCAAAAACAAGCCGTTAGAGATCCTAATATCAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCAACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCAAAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGTTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACTAGCGAACTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comH	Helicobacter pylori 26695	91.858	100	0.919