Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IPV39_RS27920 Genome accession   NZ_CP063395
Coordinates   6039335..6039859 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain ST167_d57blood     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6034335..6044859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPV39_RS27905 (IPV39_27905) aroB 6035451..6036557 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  IPV39_RS27910 (IPV39_27910) aroK 6036607..6037125 (-) 519 WP_003095833.1 shikimate kinase AroK -
  IPV39_RS27915 (IPV39_27915) pilQ 6037137..6039281 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  IPV39_RS27920 (IPV39_27920) comL/pilP 6039335..6039859 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IPV39_RS27925 (IPV39_27925) pilO 6039856..6040479 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  IPV39_RS27930 (IPV39_27930) pilN 6040476..6041072 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IPV39_RS27935 (IPV39_27935) pilM 6041072..6042136 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IPV39_RS27940 (IPV39_27940) - 6042321..6044789 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=439277 IPV39_RS27920 WP_003095836.1 6039335..6039859(-) (comL/pilP) [Pseudomonas aeruginosa strain ST167_d57blood]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=439277 IPV39_RS27920 WP_003095836.1 6039335..6039859(-) (comL/pilP) [Pseudomonas aeruginosa strain ST167_d57blood]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362