Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG562_RS00090 Genome accession   NZ_CP051505
Coordinates   13437..13718 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain SHIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8437..18718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG562_RS00070 (HG562_00070) groES 9011..9367 (-) 357 WP_000671959.1 co-chaperone GroES -
  HG562_RS00075 (HG562_00075) dnaG 9642..11321 (+) 1680 WP_000601511.1 DNA primase -
  HG562_RS00080 (HG562_00080) - 11318..12370 (+) 1053 WP_000802571.1 MnmA/TRMU family protein -
  HG562_RS00085 (HG562_00085) - 12462..13289 (+) 828 WP_202170302.1 DUF5718 family protein -
  HG562_RS00090 (HG562_00090) comB2 13437..13718 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG562_RS00095 (HG562_00095) comB3 13718..13981 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HG562_RS00100 (HG562_00100) comB4 13983..16346 (+) 2364 WP_202170303.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG562_RS00110 (HG562_00110) - 16577..18007 (+) 1431 WP_195154951.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=439277 HG562_RS00090 WP_001272686.1 13437..13718(+) (comB2) [Helicobacter pylori strain SHIM-010]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439277 HG562_RS00090 WP_001272686.1 13437..13718(+) (comB2) [Helicobacter pylori strain SHIM-010]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989