Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HF085_RS13795 | Genome accession | NZ_CP051479 |
| Coordinates | 2787491..2787961 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain NGA76 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2764771..2793130 | 2787491..2787961 | within | 0 |
Gene organization within MGE regions
Location: 2764771..2793130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF085_RS13645 (HF085_10310) | groES | 2764771..2765055 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| HF085_RS13650 (HF085_10305) | groL | 2765131..2766747 (+) | 1617 | WP_000240645.1 | chaperonin GroEL | - |
| HF085_RS13655 (HF085_10300) | - | 2767278..2768585 (-) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| HF085_RS13660 (HF085_10295) | - | 2768746..2769657 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| HF085_RS13665 (HF085_10290) | - | 2769719..2770563 (+) | 845 | Protein_2657 | class I SAM-dependent methyltransferase | - |
| HF085_RS13670 (HF085_10285) | - | 2770936..2772159 (-) | 1224 | WP_000206635.1 | ArgE/DapE family deacylase | - |
| HF085_RS13675 (HF085_10280) | lukH | 2772595..2773647 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| HF085_RS13680 (HF085_10275) | lukG | 2773669..2774685 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| HF085_RS13685 (HF085_10270) | sph | 2775186..2776010 (-) | 825 | Protein_2661 | sphingomyelin phosphodiesterase | - |
| HF085_RS13690 (HF085_10265) | - | 2776067..2777104 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| HF085_RS13695 (HF085_10260) | - | 2777163..2777627 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| HF085_RS13700 (HF085_10255) | - | 2777727..2777909 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| HF085_RS13705 (HF085_10250) | - | 2778113..2778454 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| HF085_RS13710 (HF085_10245) | - | 2778460..2779392 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| HF085_RS13715 (HF085_10240) | - | 2779408..2780121 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| HF085_RS13720 (HF085_10235) | - | 2780084..2780257 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| HF085_RS13725 (HF085_10230) | - | 2780254..2780517 (+) | 264 | Protein_2669 | helix-turn-helix transcriptional regulator | - |
| HF085_RS13730 (HF085_10225) | - | 2780533..2780748 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| HF085_RS13735 (HF085_10220) | - | 2780737..2781066 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| HF085_RS13740 (HF085_10215) | - | 2781117..2781869 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| HF085_RS13745 (HF085_10210) | - | 2781885..2782082 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| HF085_RS13750 (HF085_10205) | - | 2782069..2782449 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| HF085_RS13755 (HF085_10200) | - | 2782504..2782827 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| HF085_RS13760 (HF085_10195) | - | 2782824..2782985 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| HF085_RS13765 (HF085_10190) | - | 2783080..2783382 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| HF085_RS13770 (HF085_10185) | - | 2783387..2783647 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| HF085_RS13775 (HF085_10180) | - | 2783656..2783919 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| HF085_RS13780 (HF085_10175) | - | 2783928..2785871 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| HF085_RS13785 (HF085_10170) | - | 2785873..2786792 (+) | 920 | Protein_2681 | recombinase RecT | - |
| HF085_RS13790 (HF085_10165) | - | 2786873..2787490 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| HF085_RS13795 (HF085_10160) | ssbA | 2787491..2787961 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| HF085_RS13800 (HF085_10155) | - | 2787991..2788884 (+) | 894 | WP_103148490.1 | DnaD domain-containing protein | - |
| HF085_RS13805 (HF085_10150) | - | 2788891..2789109 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| HF085_RS13810 (HF085_10145) | - | 2789118..2789522 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HF085_RS13815 (HF085_10140) | - | 2789535..2789903 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| HF085_RS13820 (HF085_10135) | - | 2789907..2790149 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| HF085_RS13825 (HF085_10130) | - | 2790164..2790412 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| HF085_RS13830 (HF085_10125) | - | 2790405..2790941 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| HF085_RS13835 (HF085_10120) | - | 2790978..2791223 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| HF085_RS13840 (HF085_10115) | - | 2791220..2791426 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| HF085_RS13845 (HF085_10110) | - | 2791423..2791809 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| HF085_RS13850 (HF085_10105) | - | 2791806..2791955 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HF085_RS13855 (HF085_10100) | - | 2791955..2792155 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| HF085_RS13860 (HF085_10095) | - | 2792183..2792599 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| HF085_RS13865 (HF085_10090) | - | 2792831..2793130 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=438805 HF085_RS13795 WP_000934760.1 2787491..2787961(+) (ssbA) [Staphylococcus aureus strain NGA76]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=438805 HF085_RS13795 WP_000934760.1 2787491..2787961(+) (ssbA) [Staphylococcus aureus strain NGA76]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |