Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HF084_RS14335 | Genome accession | NZ_CP051191 |
| Coordinates | 2873845..2874315 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain NGA102 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2856072..2879484 | 2873845..2874315 | within | 0 |
Gene organization within MGE regions
Location: 2856072..2879484
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF084_RS14205 (HF084_10855) | - | 2856072..2856916 (+) | 845 | Protein_2765 | class I SAM-dependent methyltransferase | - |
| HF084_RS14210 (HF084_10850) | - | 2857289..2858512 (-) | 1224 | WP_000206635.1 | ArgE/DapE family deacylase | - |
| HF084_RS14215 (HF084_10845) | lukH | 2858948..2860000 (+) | 1053 | WP_000791404.1 | bi-component leukocidin LukGH subunit H | - |
| HF084_RS14220 (HF084_10840) | lukG | 2860022..2861038 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| HF084_RS14225 (HF084_10835) | sph | 2861539..2862363 (-) | 825 | Protein_2769 | sphingomyelin phosphodiesterase | - |
| HF084_RS14230 (HF084_10830) | - | 2862420..2863457 (-) | 1038 | WP_000857191.1 | site-specific integrase | - |
| HF084_RS14235 (HF084_10825) | - | 2863516..2863980 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| HF084_RS14240 (HF084_10820) | - | 2864080..2864262 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| HF084_RS14245 (HF084_10815) | - | 2864466..2864807 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| HF084_RS14250 (HF084_10810) | - | 2864813..2865745 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| HF084_RS14255 (HF084_10805) | - | 2865761..2866474 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| HF084_RS14260 (HF084_10800) | - | 2866437..2866610 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| HF084_RS14265 (HF084_10795) | - | 2866607..2866870 (+) | 264 | Protein_2777 | helix-turn-helix transcriptional regulator | - |
| HF084_RS14270 (HF084_10790) | - | 2866886..2867101 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| HF084_RS14275 (HF084_10785) | - | 2867090..2867419 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| HF084_RS14280 (HF084_10780) | - | 2867470..2868222 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| HF084_RS14285 (HF084_10775) | - | 2868238..2868435 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| HF084_RS14290 (HF084_10770) | - | 2868422..2868802 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| HF084_RS14295 (HF084_10765) | - | 2868857..2869180 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| HF084_RS14300 (HF084_10760) | - | 2869177..2869338 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| HF084_RS14305 (HF084_10755) | - | 2869433..2869735 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| HF084_RS14310 (HF084_10750) | - | 2869740..2870000 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| HF084_RS14315 (HF084_10745) | - | 2870009..2870272 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| HF084_RS14320 (HF084_10740) | - | 2870281..2872224 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| HF084_RS14325 (HF084_10735) | - | 2872226..2873146 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| HF084_RS14330 (HF084_10730) | - | 2873227..2873844 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| HF084_RS14335 (HF084_10725) | ssbA | 2873845..2874315 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| HF084_RS14340 (HF084_10720) | - | 2874345..2875238 (+) | 894 | WP_103148490.1 | DnaD domain-containing protein | - |
| HF084_RS14345 (HF084_10715) | - | 2875245..2875463 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| HF084_RS14350 (HF084_10710) | - | 2875472..2875876 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HF084_RS14355 (HF084_10705) | - | 2875889..2876257 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| HF084_RS14360 (HF084_10700) | - | 2876261..2876503 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| HF084_RS14365 (HF084_10695) | - | 2876518..2876766 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| HF084_RS14370 (HF084_10690) | - | 2876759..2877295 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| HF084_RS14375 (HF084_10685) | - | 2877332..2877577 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| HF084_RS14380 (HF084_10680) | - | 2877574..2877780 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| HF084_RS14385 (HF084_10675) | - | 2877777..2878163 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| HF084_RS14390 (HF084_10670) | - | 2878160..2878309 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| HF084_RS14395 (HF084_10665) | - | 2878309..2878509 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| HF084_RS14400 (HF084_10660) | - | 2878537..2878953 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| HF084_RS14405 (HF084_10655) | - | 2879185..2879484 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=436809 HF084_RS14335 WP_000934760.1 2873845..2874315(+) (ssbA) [Staphylococcus aureus strain NGA102]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=436809 HF084_RS14335 WP_000934760.1 2873845..2874315(+) (ssbA) [Staphylococcus aureus strain NGA102]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |