Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   INP92_RS03555 Genome accession   NZ_CP063122
Coordinates   725804..726346 (+) Length   180 a.a.
NCBI ID   WP_111387971.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 720804..731346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS03535 (INP92_03535) - 720833..721678 (-) 846 WP_049369630.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP92_RS09410 - 721742..722434 (-) 693 Protein_685 penicillin-binding protein 1A -
  INP92_RS03540 (INP92_03540) - 722510..724360 (-) 1851 Protein_686 penicillin-binding protein 1A -
  INP92_RS03545 (INP92_03545) comA 724460..725308 (+) 849 WP_111387975.1 competence protein ComA Machinery gene
  INP92_RS03550 (INP92_03550) comB 725292..725807 (+) 516 WP_232088003.1 PilN domain-containing protein Machinery gene
  INP92_RS03555 (INP92_03555) comC 725804..726346 (+) 543 WP_111387971.1 competence protein ComC Machinery gene
  INP92_RS03560 (INP92_03560) - 726346..726729 (+) 384 WP_111387969.1 pilus assembly protein PilP -
  INP92_RS03565 (INP92_03565) comE 726731..728113 (+) 1383 WP_111387967.1 type IV pilus secretin PilQ Machinery gene
  INP92_RS03570 (INP92_03570) - 728133..728822 (+) 690 WP_111387965.1 ComF family protein -
  INP92_RS03575 (INP92_03575) nfuA 728938..729522 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  INP92_RS03580 (INP92_03580) comM 729566..731095 (-) 1530 WP_111387963.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21036.14 Da        Isoelectric Point: 6.0004

>NTDB_id=436808 INP92_RS03555 WP_111387971.1 725804..726346(+) (comC) [Haemophilus parainfluenzae strain M1C125_4]
MRNFINEIAQKSAQGWLGKWFRLPQMVHAIFWLSALGAVIFLPVFRYIENSDELHRLDAELSLQQQEWEKQEKILRTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLLHLSLQGYFVDLQQFLTALLNDVPTLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=436808 INP92_RS03555 WP_111387971.1 725804..726346(+) (comC) [Haemophilus parainfluenzae strain M1C125_4]
ATGAGGAACTTTATCAATGAGATCGCTCAAAAAAGTGCACAAGGTTGGTTGGGAAAATGGTTTCGATTACCTCAAATGGT
CCATGCTATCTTTTGGTTGAGCGCACTAGGTGCGGTCATCTTTTTACCTGTTTTTCGTTACATTGAAAATAGCGATGAAC
TGCATCGACTTGATGCAGAATTGAGTTTGCAACAACAAGAATGGGAGAAACAGGAAAAGATTTTACGAACCTTAAGACAA
AAGTCAGACAGCCGACAACTTTCTCCAGAATTGGCTAATTCTGTGTTGCCGATCAATCAGCATGTTCAGGCATTGTTAAA
TGGGCGACTTCGAGCGTTGGATTTGCGTTGGGATTTTTCTCAACATACTTTGTTGCATTTGTCGTTACAAGGCTATTTTG
TCGATTTACAGCAATTTTTGACCGCACTTTTAAACGATGTTCCTACACTTTCTTTAACGCAATTAAATATTGAGAAATTA
GATGAAGAGGAAAATGCCTCTATTACATGCGAGTTAATTTTCCAACTGAATAAGGACAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

41.718

90.556

0.378
  comC Haemophilus influenzae Rd KW20

41.104

90.556

0.372