Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP92_RS03550 Genome accession   NZ_CP063122
Coordinates   725292..725807 (+) Length   171 a.a.
NCBI ID   WP_232088003.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 720292..730807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS03530 (INP92_03530) psiE 720381..720797 (+) 417 WP_049365746.1 phosphate-starvation-inducible protein PsiE -
  INP92_RS03535 (INP92_03535) - 720833..721678 (-) 846 WP_049369630.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP92_RS09410 - 721742..722434 (-) 693 Protein_685 penicillin-binding protein 1A -
  INP92_RS03540 (INP92_03540) - 722510..724360 (-) 1851 Protein_686 penicillin-binding protein 1A -
  INP92_RS03545 (INP92_03545) comA 724460..725308 (+) 849 WP_111387975.1 competence protein ComA Machinery gene
  INP92_RS03550 (INP92_03550) comB 725292..725807 (+) 516 WP_232088003.1 PilN domain-containing protein Machinery gene
  INP92_RS03555 (INP92_03555) comC 725804..726346 (+) 543 WP_111387971.1 competence protein ComC Machinery gene
  INP92_RS03560 (INP92_03560) - 726346..726729 (+) 384 WP_111387969.1 pilus assembly protein PilP -
  INP92_RS03565 (INP92_03565) comE 726731..728113 (+) 1383 WP_111387967.1 type IV pilus secretin PilQ Machinery gene
  INP92_RS03570 (INP92_03570) - 728133..728822 (+) 690 WP_111387965.1 ComF family protein -
  INP92_RS03575 (INP92_03575) nfuA 728938..729522 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 20236.38 Da        Isoelectric Point: 6.3323

>NTDB_id=436807 INP92_RS03550 WP_232088003.1 725292..725807(+) (comB) [Haemophilus parainfluenzae strain M1C125_4]
MMLSLNLLPWRVEQHQKAFRRFMWQGLIWLACSVLIVVGLNQLNEQQGQALSQTKEKLTQITNQVHQKRIQVQQLQSNLK
EMNELTEMDTEYVYRMLNLLTELPLQQGELDVFTLNAKQVVLSGMTENQQEFEAIHQFLKRHFTEVNLTKFQPVQQQLLF
QFDIHLSEPVQ

Nucleotide


Download         Length: 516 bp        

>NTDB_id=436807 INP92_RS03550 WP_232088003.1 725292..725807(+) (comB) [Haemophilus parainfluenzae strain M1C125_4]
ATGATGTTAAGCCTTAATTTATTGCCTTGGCGCGTAGAACAACATCAAAAGGCTTTTCGGCGCTTTATGTGGCAAGGTTT
AATTTGGCTAGCTTGCTCAGTTTTGATTGTTGTTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGCCAGA
CAAAAGAAAAACTCACACAAATTACCAATCAAGTCCATCAGAAACGCATTCAAGTTCAGCAACTACAGAGTAACCTGAAA
GAAATGAATGAGCTGACAGAGATGGATACAGAATATGTGTATCGGATGCTTAACTTATTAACTGAGTTACCATTACAACA
AGGTGAGTTAGATGTATTTACGCTCAATGCTAAGCAAGTTGTCCTTTCAGGCATGACGGAAAATCAACAAGAATTTGAAG
CAATACATCAATTTCTTAAACGCCATTTTACCGAGGTTAATTTAACCAAGTTTCAACCAGTGCAACAACAGTTACTCTTT
CAGTTTGATATTCATTTATCGGAGCCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

40.741

94.737

0.386
  comB Haemophilus influenzae Rd KW20

40.123

94.737

0.38