Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HF394_RS06830 Genome accession   NZ_CP051177
Coordinates   1459068..1459547 (-) Length   159 a.a.
NCBI ID   WP_036810886.1    Uniprot ID   A0A7H8Q9W7
Organism   Planococcus glaciei strain CNCTC7660     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1454068..1464547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF394_RS06810 (HF394_06815) rplI 1455208..1455657 (-) 450 WP_074511797.1 50S ribosomal protein L9 -
  HF394_RS06815 (HF394_06820) - 1455654..1457630 (-) 1977 WP_176294342.1 DHH family phosphoesterase -
  HF394_RS06820 (HF394_06825) - 1457645..1458595 (-) 951 WP_176294343.1 YybS family protein -
  HF394_RS06825 (HF394_06830) rpsR 1458775..1459011 (-) 237 WP_036810891.1 30S ribosomal protein S18 -
  HF394_RS06830 (HF394_06835) ssbA 1459068..1459547 (-) 480 WP_036810886.1 single-stranded DNA-binding protein Machinery gene
  HF394_RS06835 (HF394_06840) rpsF 1459590..1459877 (-) 288 WP_036810883.1 30S ribosomal protein S6 -
  HF394_RS06840 (HF394_06845) - 1460052..1460612 (+) 561 WP_176294344.1 DUF3267 domain-containing protein -
  HF394_RS06845 (HF394_06850) - 1460633..1461019 (-) 387 WP_176294345.1 gamma-glutamylcyclotransferase -
  HF394_RS06850 (HF394_06855) ychF 1461282..1462382 (-) 1101 WP_053166918.1 redox-regulated ATPase YchF -
  HF394_RS06855 (HF394_06860) - 1462540..1462740 (-) 201 WP_036810873.1 DUF951 domain-containing protein -
  HF394_RS06860 (HF394_06865) - 1462757..1463593 (-) 837 WP_051413935.1 mechanosensitive ion channel family protein -
  HF394_RS06865 (HF394_06870) - 1463703..1464419 (-) 717 WP_074511807.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17440.09 Da        Isoelectric Point: 4.9327

>NTDB_id=436632 HF394_RS06830 WP_036810886.1 1459068..1459547(-) (ssbA) [Planococcus glaciei strain CNCTC7660]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKETDFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPKNSGANADRSQGQQPSYQQNQSPSPSQQNYTRVDQDPFSSGSGPIEVSDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=436632 HF394_RS06830 WP_036810886.1 1459068..1459547(-) (ssbA) [Planococcus glaciei strain CNCTC7660]
ATGATTAACCGAGTTGTTTTAGTCGGAAGACTGACAAAAGATCCTGACCTTCGCTACACTCCAAGCGGAGCGGCGGTTGC
CCGTTTTACACTTGCTGTAAACCGGACATTCTCCAATGCGCAAGGCGAGAAGGAAACAGATTTTATCAATTGTACTGTTT
GGCGCAAACAAGCTGAAAACACAGCGAACTTCCTGAAAAAAGGAAGCTTGGCTGGTGTGGAAGGCCGCATCCAGACTGGA
AGCTACGAAGGACAAGACGGGAAACGCGTCTATACGACGGAAGTCGTGGCAGACAGTGTCCAGTTCCTTGAGCCGAAAAA
CTCTGGGGCTAATGCAGACCGCTCGCAAGGGCAGCAGCCGTCCTATCAGCAGAACCAATCGCCGAGCCCAAGTCAGCAGA
ACTATACACGTGTAGACCAGGATCCATTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGATGACGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8Q9W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.654
  ssb Latilactobacillus sakei subsp. sakei 23K

52.632

100

0.566
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.487

71.069

0.465
  ssb Neisseria gonorrhoeae MS11

36.416

100

0.396
  ssb Vibrio cholerae strain A1552

33.889

100

0.384
  ssb Neisseria meningitidis MC58

35.465

100

0.384