Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HEQ85_RS23765 Genome accession   NZ_CP051168
Coordinates   5422770..5423135 (-) Length   121 a.a.
NCBI ID   WP_199247144.1    Uniprot ID   -
Organism   [Phormidium] sp. ETS-05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5417770..5428135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ85_RS23755 - 5418113..5421784 (-) 3672 WP_233258391.1 methyl-accepting chemotaxis protein -
  HEQ85_RS23760 - 5422018..5422545 (-) 528 WP_199247143.1 chemotaxis protein CheW -
  HEQ85_RS23765 pilH 5422770..5423135 (-) 366 WP_199247144.1 response regulator transcription factor Machinery gene
  HEQ85_RS29105 - 5423381..5423503 (-) 123 WP_255552731.1 hypothetical protein -
  HEQ85_RS23770 - 5424233..5425456 (-) 1224 WP_199247145.1 response regulator -
  HEQ85_RS23775 - 5425970..5426110 (-) 141 WP_199247146.1 hypothetical protein -
  HEQ85_RS23780 - 5426250..5426453 (-) 204 WP_199247147.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13399.57 Da        Isoelectric Point: 5.1858

>NTDB_id=436526 HEQ85_RS23765 WP_199247144.1 5422770..5423135(-) (pilH) [[Phormidium] sp. ETS-05]
MSTVLVVEDSITQREMISTLLKGSGLTVAVASDGVEALERIQEHCPDLVVLDIVMPRMNGYEVCRRLKADPKTQNLPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=436526 HEQ85_RS23765 WP_199247144.1 5422770..5423135(-) (pilH) [[Phormidium] sp. ETS-05]
ATGAGTACAGTTCTGGTTGTGGAAGATAGCATCACGCAACGGGAGATGATTTCCACCCTCCTCAAAGGTAGTGGGTTAAC
AGTTGCCGTGGCCAGTGATGGCGTGGAAGCATTAGAGAGAATTCAGGAGCATTGCCCGGATTTAGTGGTATTGGATATTG
TCATGCCCCGCATGAATGGCTATGAAGTGTGCAGACGTTTAAAGGCAGATCCGAAAACTCAGAATCTGCCTGTGGTGATG
TGTTCGTCGAAAGGGGAAGAATTCGATCGCTACTGGGGGATGAAACAAGGTGCGGACGCCTACATCGCCAAACCTTTTCA
ACCCACAGAACTGGTAGGAACTGTAAAACAGCTTCTCCGGGGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  pilG Acinetobacter baumannii strain A118

43.86

94.215

0.413
  pilL-C Synechocystis sp. PCC 6803

39.167

99.174

0.388
  micA Streptococcus pneumoniae Cp1015

37.5

99.174

0.372
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372