Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HCG48_RS10305 Genome accession   NZ_CP051167
Coordinates   2533295..2533660 (+) Length   121 a.a.
NCBI ID   WP_168569086.1    Uniprot ID   -
Organism   Oxynema aestuarii AP17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528295..2538660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG48_RS10285 (HCG48_10285) hmpF 2529078..2530838 (-) 1761 WP_168569082.1 pilus motility taxis protein HmpF -
  HCG48_RS10290 (HCG48_10290) - 2531023..2531166 (+) 144 WP_168569083.1 hypothetical protein -
  HCG48_RS10295 (HCG48_10295) - 2531489..2532754 (+) 1266 WP_168569084.1 response regulator -
  HCG48_RS10300 (HCG48_10300) - 2532725..2533072 (-) 348 WP_168569085.1 hypothetical protein -
  HCG48_RS10305 (HCG48_10305) pilH 2533295..2533660 (+) 366 WP_168569086.1 response regulator transcription factor Machinery gene
  HCG48_RS10310 (HCG48_10310) - 2533674..2534204 (+) 531 WP_168569087.1 chemotaxis protein CheW -
  HCG48_RS10315 (HCG48_10315) - 2534351..2537371 (+) 3021 WP_168569088.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13376.49 Da        Isoelectric Point: 4.8658

>NTDB_id=436502 HCG48_RS10305 WP_168569086.1 2533295..2533660(+) (pilH) [Oxynema aestuarii AP17]
MSTVLVVEDSVTQREMISNLLKGSGLNVSVATDGVEALEQIQDKCPDLVVLDIVMPRMNGYEVCRRLKADPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=436502 HCG48_RS10305 WP_168569086.1 2533295..2533660(+) (pilH) [Oxynema aestuarii AP17]
ATGAGTACAGTTCTGGTTGTGGAAGACAGCGTCACGCAACGGGAGATGATCTCAAACCTCCTCAAGGGGAGTGGATTAAA
TGTTAGCGTGGCCACGGATGGCGTCGAAGCATTAGAGCAGATCCAGGATAAATGTCCCGACCTGGTCGTTCTCGATATCG
TCATGCCCCGCATGAACGGTTACGAAGTATGCAGGCGTCTCAAAGCCGATCCAAAAACACAAAATGTTCCCGTCGTGATG
TGTTCTTCCAAAGGGGAGGAATTCGATCGCTATTGGGGCATGAAACAAGGCGCGGACGCCTATATTGCCAAACCGTTCCA
ACCCACCGAACTGGTCGGGACGGTCAAACAACTACTCAGAGGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.5

99.174

0.769
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  pilL-C Synechocystis sp. PCC 6803

39.167

99.174

0.388
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  chpA Acinetobacter baumannii strain A118

40.517

95.868

0.388
  vicR Streptococcus mutans UA159

37.5

99.174

0.372