Detailed information NTG0433725

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: HCN55_RS06180
• Genome accession: NZ_CP050532
• Coordinates: 1199911..1200864 (+)
• Length: 317 a.a.
• NCBI ID: WP_003245494.1
• Uniprot ID: A0AAE2SG99
• Organism: Bacillus subtilis subsp. subtilis str. SMY
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1194911..1205864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCN55_RS06155 (HCN55_06160)	argF	1196743..1197702 (+)	960	WP_003232980.1	ornithine carbamoyltransferase	-
HCN55_RS06160 (HCN55_06165)	yjzC	1197788..1197967 (+)	180	WP_003245356.1	YjzC family protein	-
HCN55_RS06165 (HCN55_06170)	yjzD	1198013..1198198 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
HCN55_RS06170 (HCN55_06175)	-	1198447..1199181 (+)	735	WP_003245223.1	hypothetical protein	-
HCN55_RS06175 (HCN55_06180)	-	1199263..1199820 (+)	558	WP_003232974.1	hypothetical protein	-
HCN55_RS06180 (HCN55_06185)	med	1199911..1200864 (+)	954	WP_003245494.1	transcriptional regulator Med	Regulator
HCN55_RS06185 (HCN55_06190)	comZ	1200879..1201070 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
HCN55_RS06190 (HCN55_06195)	yjzB	1201100..1201339 (-)	240	WP_003232972.1	spore coat protein YjzB	-
HCN55_RS06195 (HCN55_06200)	fabH	1201504..1202442 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
HCN55_RS06200 (HCN55_06205)	fabF	1202465..1203706 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
HCN55_RS06205 (HCN55_06210)	yjaZ	1203783..1204568 (+)	786	WP_003232967.1	DUF2268 domain-containing protein	-
HCN55_RS06210 (HCN55_06215)	appD	1204760..1205746 (+)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.80 Da
• Isoelectric Point: 4.5457

>NTDB_id=433725 HCN55_RS06180 WP_003245494.1 1199911..1200864(+) (med) [Bacillus subtilis subsp. subtilis str. SMY]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=433725 HCN55_RS06180 WP_003245494.1 1199911..1200864(+) (med) [Bacillus subtilis subsp. subtilis str. SMY]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	100	100	1