Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | SCIM_RS05765 | Genome accession | NC_018073 |
| Coordinates | 1182958..1183638 (-) | Length | 226 a.a. |
| NCBI ID | WP_003072284.1 | Uniprot ID | T1ZDF0 |
| Organism | Streptococcus intermedius JTH08 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1177958..1188638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCIM_RS05735 (SCIM_1034) | - | 1178402..1178962 (+) | 561 | WP_014829726.1 | CYTH domain-containing protein | - |
| SCIM_RS05740 (SCIM_1035) | - | 1179046..1180005 (+) | 960 | WP_100207837.1 | ribose-phosphate diphosphokinase | - |
| SCIM_RS05745 (SCIM_1036) | - | 1180015..1181130 (+) | 1116 | WP_003076970.1 | cysteine desulfurase family protein | - |
| SCIM_RS05750 (SCIM_1037) | - | 1181135..1181482 (+) | 348 | WP_003072290.1 | DUF1831 domain-containing protein | - |
| SCIM_RS05755 (SCIM_1038) | - | 1181663..1182307 (+) | 645 | WP_003076985.1 | redox-sensing transcriptional repressor Rex | - |
| SCIM_RS10205 | - | 1182325..1182961 (+) | 637 | Protein_1133 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| SCIM_RS05765 (SCIM_1039) | radC | 1182958..1183638 (-) | 681 | WP_003072284.1 | RadC family protein | Machinery gene |
| SCIM_RS05770 (SCIM_1040) | phoU | 1183724..1184377 (-) | 654 | WP_003076541.1 | phosphate signaling complex protein PhoU | - |
| SCIM_RS05775 (SCIM_1041) | pstB | 1184458..1185216 (-) | 759 | WP_003076735.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| SCIM_RS05780 (SCIM_1042) | pstB | 1185256..1186059 (-) | 804 | WP_003069507.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| SCIM_RS05785 (SCIM_1043) | pstA | 1186071..1186955 (-) | 885 | WP_003076526.1 | phosphate ABC transporter permease PstA | - |
| SCIM_RS05790 (SCIM_1044) | pstC | 1186945..1187856 (-) | 912 | WP_003076298.1 | phosphate ABC transporter permease subunit PstC | - |
Sequence
Protein
Download Length: 226 a.a. Molecular weight: 25756.79 Da Isoelectric Point: 6.9811
>NTDB_id=43321 SCIM_RS05765 WP_003072284.1 1182958..1183638(-) (radC) [Streptococcus intermedius JTH08]
MYSISFQEDSLLPRERLVAEGAEQLSNQELLSILLRTGNKKETVFQVSQRILSTISSLNELRNMTLQELQSISGIGRIKA
IELQAMVELGQRISKAKLIMQEQILSSQKLAKKMQQELGHKKQEHLVALYLDTQNKIIHQQTIFIGSVSRSIAEPREILH
YAVKHMATSIILVHNHPSGAVLPSKNDDEVTKHVREACELMGFILLDHLIVAEKDYYSYREETELI
MYSISFQEDSLLPRERLVAEGAEQLSNQELLSILLRTGNKKETVFQVSQRILSTISSLNELRNMTLQELQSISGIGRIKA
IELQAMVELGQRISKAKLIMQEQILSSQKLAKKMQQELGHKKQEHLVALYLDTQNKIIHQQTIFIGSVSRSIAEPREILH
YAVKHMATSIILVHNHPSGAVLPSKNDDEVTKHVREACELMGFILLDHLIVAEKDYYSYREETELI
Nucleotide
Download Length: 681 bp
>NTDB_id=43321 SCIM_RS05765 WP_003072284.1 1182958..1183638(-) (radC) [Streptococcus intermedius JTH08]
ATGTATAGTATTTCATTTCAGGAAGATTCTTTATTACCAAGAGAACGCTTGGTAGCAGAAGGTGCAGAACAATTGAGTAA
TCAAGAATTATTATCTATTCTTCTCCGAACAGGTAATAAAAAAGAAACTGTTTTTCAAGTTTCCCAACGAATTTTATCGA
CTATTTCTAGTTTAAATGAGTTACGTAATATGACGCTACAAGAACTACAATCAATCTCTGGAATTGGTCGTATCAAAGCT
ATTGAGTTGCAAGCTATGGTTGAATTAGGGCAACGAATCAGCAAGGCAAAATTGATTATGCAAGAGCAGATTTTAAGTAG
CCAAAAATTAGCGAAAAAAATGCAACAGGAATTAGGACATAAAAAACAGGAACATCTTGTTGCTTTATATCTAGACACTC
AAAATAAAATAATTCATCAACAGACTATTTTTATCGGCAGTGTGTCACGCAGTATAGCAGAACCACGTGAAATTTTGCAC
TATGCTGTGAAACATATGGCGACATCTATTATATTAGTACATAATCATCCCTCAGGAGCGGTACTACCTAGCAAAAACGA
CGATGAAGTGACCAAACATGTAAGAGAAGCATGTGAGCTAATGGGCTTCATCTTACTGGATCATCTCATCGTCGCTGAGA
AAGATTATTATAGTTATCGAGAAGAAACAGAATTGATTTAA
ATGTATAGTATTTCATTTCAGGAAGATTCTTTATTACCAAGAGAACGCTTGGTAGCAGAAGGTGCAGAACAATTGAGTAA
TCAAGAATTATTATCTATTCTTCTCCGAACAGGTAATAAAAAAGAAACTGTTTTTCAAGTTTCCCAACGAATTTTATCGA
CTATTTCTAGTTTAAATGAGTTACGTAATATGACGCTACAAGAACTACAATCAATCTCTGGAATTGGTCGTATCAAAGCT
ATTGAGTTGCAAGCTATGGTTGAATTAGGGCAACGAATCAGCAAGGCAAAATTGATTATGCAAGAGCAGATTTTAAGTAG
CCAAAAATTAGCGAAAAAAATGCAACAGGAATTAGGACATAAAAAACAGGAACATCTTGTTGCTTTATATCTAGACACTC
AAAATAAAATAATTCATCAACAGACTATTTTTATCGGCAGTGTGTCACGCAGTATAGCAGAACCACGTGAAATTTTGCAC
TATGCTGTGAAACATATGGCGACATCTATTATATTAGTACATAATCATCCCTCAGGAGCGGTACTACCTAGCAAAAACGA
CGATGAAGTGACCAAACATGTAAGAGAAGCATGTGAGCTAATGGGCTTCATCTTACTGGATCATCTCATCGTCGCTGAGA
AAGATTATTATAGTTATCGAGAAGAAACAGAATTGATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Streptococcus gordonii str. Challis substr. CH1 |
78.319 |
100 |
0.783 |
| radC | Streptococcus pneumoniae TIGR4 |
76.106 |
100 |
0.761 |
| radC | Streptococcus pneumoniae R6 |
75.664 |
100 |
0.757 |
| radC | Streptococcus pneumoniae D39 |
75.664 |
100 |
0.757 |
| ysxA/radC | Bacillus subtilis subsp. subtilis str. 168 |
46.479 |
94.248 |
0.438 |
| radC | Haemophilus influenzae Rd KW20 |
37.788 |
96.018 |
0.363 |