Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HB760_RS12625 Genome accession   NZ_CP050463
Coordinates   2714734..2715252 (-) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain LJC015     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2709734..2720252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS12600 (HB760_12515) rimM 2709790..2710338 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  HB760_RS12605 (HB760_12520) rpsP 2710366..2710614 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB760_RS12610 (HB760_12525) ffh 2710825..2712207 (-) 1383 WP_255899268.1 signal recognition particle protein -
  HB760_RS12615 (HB760_12530) - 2712421..2713215 (+) 795 WP_255899266.1 inner membrane protein YpjD -
  HB760_RS12620 (HB760_12535) - 2713371..2714645 (+) 1275 WP_255899264.1 HlyC/CorC family transporter -
  HB760_RS12625 (HB760_12540) luxS 2714734..2715252 (-) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  HB760_RS12630 (HB760_12545) - 2715342..2715905 (-) 564 WP_012128887.1 hypothetical protein -
  HB760_RS12635 (HB760_12550) gshA 2715967..2717535 (-) 1569 WP_255899262.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=433014 HB760_RS12625 WP_010643243.1 2714734..2715252(-) (luxS) [Vibrio campbellii strain LJC015]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=433014 HB760_RS12625 WP_010643243.1 2714734..2715252(-) (luxS) [Vibrio campbellii strain LJC015]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86