Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HCG51_RS14075 Genome accession   NZ_CP050440
Coordinates   3538405..3538770 (-) Length   121 a.a.
NCBI ID   WP_045867638.1    Uniprot ID   A0A0D6L0Y8
Organism   Tolypothrix sp. PCC 7910     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3533405..3543770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG51_RS14065 (HCG51_14070) - 3534857..3537844 (-) 2988 WP_167722348.1 methyl-accepting chemotaxis protein -
  HCG51_RS14070 (HCG51_14075) - 3537861..3538391 (-) 531 WP_045867637.1 chemotaxis protein CheW -
  HCG51_RS14075 (HCG51_14080) pilH 3538405..3538770 (-) 366 WP_045867638.1 response regulator transcription factor Machinery gene
  HCG51_RS14080 (HCG51_14085) - 3538953..3540179 (-) 1227 WP_167722350.1 response regulator -
  HCG51_RS14085 (HCG51_14090) hmpF 3540737..3542494 (+) 1758 WP_167722352.1 pilus motility taxis protein HmpF -
  HCG51_RS14090 (HCG51_14095) tilS 3542601..3543590 (-) 990 WP_167722354.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13326.41 Da        Isoelectric Point: 4.8604

>NTDB_id=432709 HCG51_RS14075 WP_045867638.1 3538405..3538770(-) (pilH) [Tolypothrix sp. PCC 7910]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=432709 HCG51_RS14075 WP_045867638.1 3538405..3538770(-) (pilH) [Tolypothrix sp. PCC 7910]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCACAAAGGGAGATGATTACAGACCTCCTGAAAGCAAGTGGCTTAAC
AGTCACCCATGCCAGTGATGGGGTTGAAGCTTTGGAGGCAATTCAAAGCACACCTCCTGATTTAGTGGTCTTGGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGCCGTCGGTTAAAATCCGATCCGAAAACCCAAAATGTCCCCGTTGTGATG
TGTTCTTCTAAAGGTGAAGAATTTGATCGCTACTGGGGCATGAAACAGGGTGCAGACGCTTACATAGCCAAACCGTTTCA
ACCAACTGAGTTGGTGGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6L0Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364