Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BDGL_002657 Genome accession   NC_016603
Coordinates   2852987..2855152 (-) Length   721 a.a.
NCBI ID   YP_004996925.1    Uniprot ID   F0KG12
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2847987..2860152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002654 - 2850409..2851278 (-) 870 YP_004996922.1 hypothetical protein -
  BDGL_002655 aroB 2851295..2852395 (-) 1101 YP_004996923.1 3-dehydroquinate synthase -
  BDGL_002656 aroK 2852406..2852975 (-) 570 YP_004996924.1 shikimate-kinase -
  BDGL_002657 pilQ 2852987..2855152 (-) 2166 YP_004996925.1 type IV pilus assembly protein PilQ Machinery gene
  BDGL_002658 pilP 2855215..2855742 (-) 528 YP_004996926.1 type IV pilus assembly protein PilP Machinery gene
  BDGL_002659 pilO 2855753..2856505 (-) 753 YP_004996927.1 type IV pilus assembly protein PilO Machinery gene
  BDGL_002660 pilN 2856502..2857143 (-) 642 YP_004996928.1 type IV pilus assembly protein PilN Machinery gene
  BDGL_002661 pilM 2857143..2858165 (-) 1023 YP_004996929.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78031.53 Da        Isoelectric Point: 6.7691

>NTDB_id=42983 BDGL_002657 YP_004996925.1 2852987..2855152(-) (pilQ) [Acinetobacter pittii PHEA-2]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPIHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMSLITQGSNNSNGLQRTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVSGAAPN
GELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=42983 BDGL_002657 YP_004996925.1 2852987..2855152(-) (pilQ) [Acinetobacter pittii PHEA-2]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCCTATCAGCTTGAGAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGAGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACCTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTATACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAACGATA
AAGGCAATGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACAATT
AGTCTAAAACGTCCGCAGGACAAAAATGTAACCTCTTTATATAAAACACCTAATTACTCTGGTAATAAGCTTTCTCTCGA
TTTCCAAGATATTGAAGTTCGCCGCGTTTTACAGTTACTTGCTGATTTTACTGGTATTAATATGGTTGCGGCTGACAGCG
TTCAAGGTAATATTACTTTGCGTTTAAAAGATGTACCATGGGACCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAAGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGTAACGGTTTACAACGAACTTCTGGTGGGGGAACATCCACCTCAACCAATTTA
AATACTGGGGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACCAAAGAGCTCGGTGTTAAATGGGGTATATTA
TCGCAAGGGATCACTAACAATAATAATTTGTTAGTTGGTGGTAGTGAAACGACCTTGTGGAATTTACGAGAGCCTAAAAA
GGATGAGACTACGGGTGGTTACAAATACACGATTGAACGTCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGG
CTGGAAGTATTGCCTTTGGCTTAATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAGGCTGATGGT
TATGGTGAGGTTATTTCTACCCCGAAAGTAATGACTGCAGATAAACAACCTGCAAAAGTTGCAACAGGTCAACAGGTCCC
ATATCAAACCACAACTAATTCTGCTGCGGGTGCCACAGCAAGTACATCATTTAAAGATGCACTTTTAAGTTTGGATGTTA
CTCCGAGTATTACGCCTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAGGATTCGGTTTCGGGTGCGGCTCCTAAT
GGTGAATTGATCCTAAATAAAAATAATATCAAGACAAATGTGTTGGTGAATAATGGTGAGACAGTCATTTTAGGAGGGGT
GTTTGAGCAGACAACCCTTAACTCTCAAACCAAAGTTCCTTTCTTTGGGGATTTACCGGGAATTGGACGCCTATTTAGGA
AAGATCAGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(40-118)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KG12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

92.51

100

0.925
  pilQ Acinetobacter baumannii strain A118

92.372

100

0.924
  comQ Acinetobacter baylyi ADP1

74.965

100

0.752
  pilQ Pseudomonas aeruginosa PAK

39.86

99.168

0.395

Multiple sequence alignment