Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BDGL_002661 Genome accession   NC_016603
Coordinates   2857143..2858165 (-) Length   340 a.a.
NCBI ID   YP_004996929.1    Uniprot ID   F0KG16
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2852143..2863165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002656 aroK 2852406..2852975 (-) 570 YP_004996924.1 shikimate-kinase -
  BDGL_002657 pilQ 2852987..2855152 (-) 2166 YP_004996925.1 type IV pilus assembly protein PilQ Machinery gene
  BDGL_002658 pilP 2855215..2855742 (-) 528 YP_004996926.1 type IV pilus assembly protein PilP Machinery gene
  BDGL_002659 pilO 2855753..2856505 (-) 753 YP_004996927.1 type IV pilus assembly protein PilO Machinery gene
  BDGL_002660 pilN 2856502..2857143 (-) 642 YP_004996928.1 type IV pilus assembly protein PilN Machinery gene
  BDGL_002661 pilM 2857143..2858165 (-) 1023 YP_004996929.1 type IV pilus assembly protein PilM Machinery gene
  BDGL_002662 ponA 2858390..2860924 (+) 2535 YP_004996930.1 putative penicillin binding protein (PonA) -
  BDGL_002663 rrmA 2860940..2861764 (-) 825 YP_004996931.1 23S rRNA methyltransferase RumA -
  BDGL_002664 - 2861767..2862099 (-) 333 YP_004996932.1 hypothetical protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37597.80 Da        Isoelectric Point: 4.2981

>NTDB_id=42987 BDGL_002661 YP_004996929.1 2857143..2858165(-) (pilM) [Acinetobacter pittii PHEA-2]
MGVDISSTSVKLLELSVKNGKYWVESYALTPLPENSVVEKNILNPEAVAEALERAMNLANPHTTNAAIAVPTSTVIHKTI
EMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLELVDLTPKLADVES
YAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEEAGRAKKERSLPD
DYDIEILEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFLQMGFSPQVDVQK
IENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=42987 BDGL_002661 YP_004996929.1 2857143..2858165(-) (pilM) [Acinetobacter pittii PHEA-2]
ATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCTCTCTGTTAAGAACGGTAAATATTGGGTAGAAAGCTA
TGCTTTAACGCCTTTACCTGAGAACAGTGTAGTTGAAAAAAATATCTTGAATCCAGAAGCAGTTGCAGAAGCTTTGGAAC
GGGCGATGAATTTAGCAAATCCCCACACCACTAACGCTGCAATTGCTGTTCCAACATCGACGGTTATTCATAAAACCATC
GAAATGGATGCAGATATGAACGATGATGAACGTGAAGTTCAGATTCGATTAGATGCGGAGCAATATATACCGTTCCCTTT
AGATGAGGTGAGCCTTGATTTTGAGGTTTTACCAGATCGACTGCCGAATCCAAATCGTGTGAATGTACTTTTAGTCGCAA
CACGAACAGAAAATGTTGAAACACGCGTAGAAGTACTGGAACTGGTTGATTTAACGCCTAAGCTTGCTGATGTTGAAAGT
TATGCTGTCGAGCGTGCTTTTAGTGTGTTTGCTGATAGCTTACCCATGGGTGCAAATACCATTGGTATTTTAGATATTGG
CCATACCATGACCACATTATCGGTTATGCAAAATGGCAAAATCATTTATACCCGTGAACAAGTCTTTGGCGGTAAACAGC
TTACTTTGGAAATTCAAAGCCGTTACGGTTTGTCATTAGAAGAAGCGGGACGCGCTAAAAAAGAACGTTCTTTGCCAGAT
GATTATGACATCGAAATCTTAGAACCATTCTTAGATGCTGTAGTTCAGCAAGCTGCTAGATCTCTACAATTTTTCTTCTC
TTCATCCCAATTCAATGAAATTGACCATATTTTGCTAGCGGGTGGCAATGCCAACATTCCAGGGCTTGCTAAATTGTTGC
AGCAGAAACTCGGTTACCGAGTCACTATTGCCAATCCATTTTTACAAATGGGTTTCTCTCCTCAAGTCGACGTTCAAAAA
ATTGAAAATGATGCTTCTTCATTAATGGTGGCATGTGGCTTGGCTTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(2-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KG16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.176

100

0.962
  comM Acinetobacter nosocomialis M2

96.176

100

0.962
  comM Acinetobacter baylyi ADP1

81.176

100

0.812
  pilM Legionella pneumophila strain ERS1305867

42.398

100

0.426

Multiple sequence alignment