Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BDGL_002751 Genome accession   NC_016603
Coordinates   2948685..2949272 (-) Length   195 a.a.
NCBI ID   YP_004997019.1    Uniprot ID   F0KGR6
Organism   Acinetobacter pittii PHEA-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2943685..2954272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002746 gabP 2945274..2945759 (-) 486 YP_004997014.1 gamma-aminobutyrate permease -
  BDGL_002747 gabP2 2945849..2946706 (-) 858 YP_004997015.1 gamma-aminobutyrate permease -
  BDGL_002748 ydcN 2947012..2947560 (-) 549 YP_004997016.1 DNA-binding protein -
  BDGL_002749 - 2947743..2948324 (+) 582 YP_004997017.1 hypothetical protein -
  BDGL_002750 - 2948321..2948644 (+) 324 YP_004997018.1 hypothetical protein -
  BDGL_002751 ssb 2948685..2949272 (-) 588 YP_004997019.1 ssDNA-binding protein controls activity of RecBCD nuclease Machinery gene
  BDGL_002752 yajR 2949324..2950688 (-) 1365 YP_004997020.1 membrane transporter -
  BDGL_002753 - 2950835..2951818 (-) 984 YP_004997021.1 putative integral membrane protein -
  BDGL_002754 thiED 2952180..2952854 (+) 675 YP_004997022.1 putative transcriptional activator (TenA family) -
  BDGL_002755 zntR 2952921..2953292 (+) 372 YP_004997023.1 MerR family transcriptional regulator -
  BDGL_002756 - 2953396..2954202 (+) 807 YP_004997024.1 short-chain dehydrogenase/reductase SDR -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=42988 BDGL_002751 YP_004997019.1 2948685..2949272(-) (ssb) [Acinetobacter pittii PHEA-2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=42988 BDGL_002751 YP_004997019.1 2948685..2949272(-) (ssb) [Acinetobacter pittii PHEA-2]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KGR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment