Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   BDGL_002658 Genome accession   NC_016603
Coordinates   2855215..2855742 (-) Length   175 a.a.
NCBI ID   YP_004996926.1    Uniprot ID   F0KG13
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2850215..2860742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002654 - 2850409..2851278 (-) 870 YP_004996922.1 hypothetical protein -
  BDGL_002655 aroB 2851295..2852395 (-) 1101 YP_004996923.1 3-dehydroquinate synthase -
  BDGL_002656 aroK 2852406..2852975 (-) 570 YP_004996924.1 shikimate-kinase -
  BDGL_002657 pilQ 2852987..2855152 (-) 2166 YP_004996925.1 type IV pilus assembly protein PilQ Machinery gene
  BDGL_002658 pilP 2855215..2855742 (-) 528 YP_004996926.1 type IV pilus assembly protein PilP Machinery gene
  BDGL_002659 pilO 2855753..2856505 (-) 753 YP_004996927.1 type IV pilus assembly protein PilO Machinery gene
  BDGL_002660 pilN 2856502..2857143 (-) 642 YP_004996928.1 type IV pilus assembly protein PilN Machinery gene
  BDGL_002661 pilM 2857143..2858165 (-) 1023 YP_004996929.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19278.34 Da        Isoelectric Point: 9.0286

>NTDB_id=42984 BDGL_002658 YP_004996926.1 2855215..2855742(-) (pilP) [Acinetobacter pittii PHEA-2]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALVQTPDHQIERVQVGNYMGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=42984 BDGL_002658 YP_004996926.1 2855215..2855742(-) (pilP) [Acinetobacter pittii PHEA-2]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTGAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGGTCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAATTATATGG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KG13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

73.939

94.286

0.697

Multiple sequence alignment