Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G8D99_RS01340 Genome accession   NZ_CP049916
Coordinates   286401..288590 (+) Length   729 a.a.
NCBI ID   WP_166321917.1    Uniprot ID   A0A6G8S0S1
Organism   Acinetobacter lanii strain 185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281401..293590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS01320 (G8D99_01320) comM 283418..284476 (+) 1059 WP_166321909.1 pilus assembly protein PilM Machinery gene
  G8D99_RS01325 (G8D99_01325) pilN 284476..285102 (+) 627 WP_166321911.1 PilN domain-containing protein Machinery gene
  G8D99_RS01330 (G8D99_01330) comO 285099..285857 (+) 759 WP_166321913.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8D99_RS01335 (G8D99_01335) pilP 285854..286381 (+) 528 WP_166321915.1 pilus assembly protein PilP Machinery gene
  G8D99_RS01340 (G8D99_01340) pilQ 286401..288590 (+) 2190 WP_166321917.1 type IV pilus secretin PilQ Machinery gene
  G8D99_RS01345 (G8D99_01345) aroK 288627..289175 (+) 549 WP_166321919.1 shikimate kinase AroK -
  G8D99_RS01350 (G8D99_01350) aroB 289194..290273 (+) 1080 WP_166321921.1 3-dehydroquinate synthase -
  G8D99_RS01355 (G8D99_01355) - 290288..291157 (+) 870 WP_166321932.1 hypothetical protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 79048.54 Da        Isoelectric Point: 5.8321

>NTDB_id=428627 G8D99_RS01340 WP_166321917.1 286401..288590(+) (pilQ) [Acinetobacter lanii strain 185]
MKNSLQKILGGERHFMNISMRQFALATVSMAVMQAVSAQITMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQVENPSRLI
LDFNQAKQSLVQSTIPVSTAEASSVEVASDDQRSRLTVNLNQPGNYTTRVEGNTFILKINNSNTNVATSLPNIAPVATRP
SQGLADIGFQRGGAGEGQVILNLQGANTPVDVQQQGSKVVVRFLGNKIPAHLIRRLNVNDFATPVSTVDAYNDGSNGVIT
IQSTGSYEYMAFQAEDKLTISLKRPEEKKGIKNPLANTHYVGNKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNIT
LRLKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYLQLNYAKVEDIEKLITQG
KNNNSNGNSNGSGGSSDPLGDSVGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRKMVDLLDVSVKQVMIEARIVRATTD
FTREMGVKWGLVSQGINKNNDFLVGGSQQTLWDLKTPDDDGKITITRPDNLNVDLGTTATAAGKIAFGLISMSDFMLDLE
LSALQADGHGEVISTPKVLTADKQQAKVASGQQIPYQTTETAGGAATATTSFKDALLSLDVTPSITPDGKVQMKLNISSD
SPAGYAQNGEIILNKNEINTNVLVDNGETVVLGGIFEQETSNTQTKVPFLGDIPYLGHLFRKDAKTNNKRELLIFVTPRI
VNDSPSRNH

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=428627 G8D99_RS01340 WP_166321917.1 286401..288590(+) (pilQ) [Acinetobacter lanii strain 185]
ATGAAAAATAGTCTGCAAAAAATTTTGGGTGGGGAACGTCACTTTATGAATATTTCAATGCGCCAATTTGCTCTGGCAAC
GGTCAGTATGGCTGTAATGCAAGCAGTATCCGCACAAATCACCATGACCAATGTTGTCCCAATGCAACTCCCTGGTCAGG
GCACTGAAATTCGTGTGATGTTTAATGGTTTACCTCCACAACCTCAAGCGTATCAAGTGGAAAATCCATCGCGTTTAATT
TTGGATTTCAATCAAGCCAAACAATCCTTGGTACAGTCTACGATTCCTGTATCGACAGCAGAAGCCAGCTCGGTTGAAGT
GGCCTCCGATGATCAGCGCTCACGTTTGACGGTGAATTTAAATCAACCGGGCAATTACACCACGCGAGTTGAAGGCAATA
CCTTTATTCTAAAGATCAATAATAGCAATACGAATGTCGCAACAAGCTTGCCCAATATTGCACCTGTTGCCACGCGTCCA
AGTCAAGGTCTTGCAGATATTGGCTTTCAGCGTGGTGGAGCGGGTGAAGGACAGGTCATTTTAAACTTGCAAGGGGCCAA
TACCCCTGTGGATGTACAGCAGCAAGGCAGTAAAGTGGTGGTGCGCTTCCTAGGCAATAAAATTCCCGCACACTTGATTC
GTCGTCTGAATGTCAATGATTTTGCCACGCCAGTTTCTACAGTCGATGCCTATAATGATGGTTCTAATGGTGTGATTACC
ATTCAGTCTACCGGCAGCTATGAATATATGGCTTTTCAGGCAGAAGATAAGCTGACGATCAGTTTAAAACGCCCTGAAGA
GAAAAAAGGCATTAAAAATCCTTTGGCCAATACCCATTATGTCGGTAATAAAATTTCACTCGATTTCCAAGATATTGAAG
TGCGCCGTGTATTACAGTTATTGGCGGATTTCACCGGCATCAATATGGTGGCATCCGATACGGTGCAAGGCAATATTACC
TTACGTCTAAAAGATGTGCCTTGGGATCAAGCCTTAGATATTATTTTAAAAACCAAGAATTTAGACAAACGCCGTAATGG
CAGTGTGATTTGGATCGCACCGGTGACTGAACTGATTAAAGCGGAAGAAGATGAAGCCAAAGCCATTGCACAAAGTGTTA
AATTGGCACCGCTCCAAACCGAGTATCTGCAACTGAATTATGCCAAAGTGGAAGATATTGAAAAGCTGATTACCCAAGGT
AAAAATAACAACAGTAATGGTAATAGCAATGGCAGTGGGGGTTCATCAGACCCATTGGGCGACAGTGTGGGATCATTGCT
GAGTCCACGCGGGACAGTCTCTGTTGACCCACGAACCAATACCTTAATTATCAATGATACGGCGCAGAAAATTGACCAAA
TCCGTAAAATGGTGGATTTGCTCGATGTGTCAGTGAAACAAGTCATGATCGAAGCACGTATTGTCCGTGCGACCACCGAC
TTTACCCGTGAGATGGGGGTGAAATGGGGACTGGTTTCTCAAGGCATTAATAAAAATAATGATTTCTTGGTGGGCGGTTC
TCAACAAACACTATGGGATCTCAAAACCCCAGATGATGATGGAAAAATTACCATTACCCGTCCAGATAATCTCAATGTCG
ATTTAGGCACAACAGCAACAGCTGCGGGTAAAATTGCTTTTGGTTTAATCAGTATGTCTGACTTTATGTTGGATCTTGAA
CTGTCCGCCCTGCAAGCCGATGGTCACGGAGAAGTGATTTCTACACCGAAAGTACTGACTGCAGATAAACAACAAGCCAA
AGTGGCTTCAGGTCAACAAATTCCTTATCAAACCACTGAAACAGCCGGTGGAGCAGCCACAGCCACAACTTCCTTTAAAG
ATGCATTGTTAAGTTTGGATGTAACCCCAAGTATTACCCCAGACGGCAAAGTGCAAATGAAATTGAACATTTCAAGTGAC
TCACCTGCAGGTTATGCACAAAATGGTGAAATCATTTTGAATAAAAATGAAATCAATACCAATGTGTTGGTAGACAATGG
AGAAACCGTGGTTTTAGGCGGGATTTTTGAGCAGGAAACCTCGAATACTCAAACTAAGGTGCCGTTTTTAGGTGATATTC
CGTATTTAGGTCATTTATTCCGTAAGGATGCAAAAACCAACAATAAACGTGAATTATTAATCTTTGTCACCCCAAGAATT
GTTAATGACAGTCCATCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(563-721)

Secretin and TonB N terminus short domain (STN)

(311-354)

Bacterial type II/III secretion system short domain (Secretin_N)

(381-467)

AMIN domain (AMIN)

(55-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8S0S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.428

100

0.724
  pilQ Acinetobacter baumannii strain A118

72.428

100

0.724
  comQ Acinetobacter baylyi ADP1

72.409

97.942

0.709
  pilQ Pseudomonas aeruginosa PAK

38.636

100

0.396