Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G8D99_RS00985 Genome accession   NZ_CP049916
Coordinates   217929..218507 (+) Length   192 a.a.
NCBI ID   WP_166321799.1    Uniprot ID   A0A6G8S0L3
Organism   Acinetobacter lanii strain 185     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212929..223507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS00965 (G8D99_00965) - 213595..213936 (+) 342 WP_166321791.1 GlpM family protein -
  G8D99_RS00970 (G8D99_00970) tenA 214303..214977 (-) 675 WP_166321793.1 thiaminase II -
  G8D99_RS00975 (G8D99_00975) - 215212..216291 (+) 1080 WP_166321795.1 DUF475 domain-containing protein -
  G8D99_RS00980 (G8D99_00980) - 216512..217876 (+) 1365 WP_166321797.1 MFS transporter -
  G8D99_RS00985 (G8D99_00985) ssb 217929..218507 (+) 579 WP_166321799.1 single-stranded DNA-binding protein Machinery gene
  G8D99_RS00990 (G8D99_00990) ahpC 218800..219363 (+) 564 WP_166321801.1 alkyl hydroperoxide reductase subunit C -
  G8D99_RS00995 (G8D99_00995) - 219539..220462 (-) 924 WP_166327426.1 LysR substrate-binding domain-containing protein -
  G8D99_RS01000 (G8D99_01000) ycaC 220616..221245 (-) 630 WP_166321803.1 isochorismate family cysteine hydrolase YcaC -
  G8D99_RS01005 (G8D99_01005) - 221560..222429 (+) 870 WP_166321805.1 pirin family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21351.23 Da        Isoelectric Point: 7.2010

>NTDB_id=428622 G8D99_RS00985 WP_166321799.1 217929..218507(+) (ssb) [Acinetobacter lanii strain 185]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSNNRQQNDNQGEGGYQQPRFNNNQNSQGGYGNQAPAQGGYGNQAAPQGGYG
NVNQGFQSPKPQQQPAKPMATAPSDLDDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=428622 G8D99_RS00985 WP_166321799.1 217929..218507(+) (ssb) [Acinetobacter lanii strain 185]
ATGCGCGGCGTAAACAAAGTAATCTTAGTTGGTACATTGGGTAAAGACCCAGAAACGAAAACGTTCCCAAATGGTGGTTC
ACTCACTCAGTTTTCGATCGCAACCAGCGAGTCGTGGACAGACAAAAACAGCGGTGAGCGTAAAGAGCAAACTGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAAATTGCACAACAATATTTACGTAAAGGATCGAAAGTCTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGTTACACCACAGAAATCCGTGGTGAACAAATGCAGAT
GCTCGATTCAAACAATCGTCAGCAAAATGACAATCAAGGTGAAGGCGGATATCAGCAACCTCGTTTTAACAACAATCAAA
ATAGCCAAGGCGGGTATGGCAACCAAGCACCTGCGCAAGGTGGTTACGGTAATCAAGCTGCACCACAAGGTGGTTATGGC
AATGTTAACCAAGGTTTCCAATCCCCTAAACCACAGCAGCAACCTGCTAAGCCAATGGCGACAGCACCTTCTGATCTAGA
TGATGACTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8S0L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.536
  ssb Vibrio cholerae strain A1552

46.766

100

0.49
  ssb Neisseria meningitidis MC58

40.299

100

0.422
  ssb Neisseria gonorrhoeae MS11

41.026

100

0.417