Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   G8D99_RS01330 Genome accession   NZ_CP049916
Coordinates   285099..285857 (+) Length   252 a.a.
NCBI ID   WP_166321913.1    Uniprot ID   A0A6G8S110
Organism   Acinetobacter lanii strain 185     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 280099..290857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8D99_RS01315 (G8D99_01315) ponA 280701..283253 (-) 2553 WP_166321907.1 penicillin-binding protein PBP1a -
  G8D99_RS01320 (G8D99_01320) comM 283418..284476 (+) 1059 WP_166321909.1 pilus assembly protein PilM Machinery gene
  G8D99_RS01325 (G8D99_01325) pilN 284476..285102 (+) 627 WP_166321911.1 PilN domain-containing protein Machinery gene
  G8D99_RS01330 (G8D99_01330) comO 285099..285857 (+) 759 WP_166321913.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8D99_RS01335 (G8D99_01335) pilP 285854..286381 (+) 528 WP_166321915.1 pilus assembly protein PilP Machinery gene
  G8D99_RS01340 (G8D99_01340) pilQ 286401..288590 (+) 2190 WP_166321917.1 type IV pilus secretin PilQ Machinery gene
  G8D99_RS01345 (G8D99_01345) aroK 288627..289175 (+) 549 WP_166321919.1 shikimate kinase AroK -
  G8D99_RS01350 (G8D99_01350) aroB 289194..290273 (+) 1080 WP_166321921.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28579.19 Da        Isoelectric Point: 4.5175

>NTDB_id=428625 G8D99_RS01330 WP_166321913.1 285099..285857(+) (comO) [Acinetobacter lanii strain 185]
MSREDLDDFDDALDTPKKNKMTVDKFFQQFNTLDTNNFGSWPLSVKITVWLFLFFVVCAIGYFLAIKPKLEAIDQAHAQE
QNLLNEFKDKDSKLRNLQQYQAQLQQMEANFNQQLQQLPKETEIPSLVEDINVTGVNSGLKFKNIRLENEVTQEFFIEQP
ISIEATGDYHAFGMFVSGIATLPRIVTLHDFVITATQNTDKKSDIPTVDYSLKAKTYRYVANANDVQTSTPVNTANTGEA
PPPAPTTEEVKQ

Nucleotide


Download         Length: 759 bp        

>NTDB_id=428625 G8D99_RS01330 WP_166321913.1 285099..285857(+) (comO) [Acinetobacter lanii strain 185]
ATGAGCCGTGAAGACTTAGACGATTTTGATGATGCGCTCGATACACCGAAAAAAAATAAAATGACGGTGGATAAGTTTTT
TCAACAGTTCAATACCTTAGATACCAATAACTTTGGAAGCTGGCCTTTATCGGTCAAAATTACCGTGTGGTTATTTTTGT
TTTTTGTGGTGTGTGCCATTGGTTATTTTCTGGCGATTAAGCCGAAACTTGAGGCGATTGATCAAGCCCATGCACAAGAG
CAAAACTTGCTGAATGAGTTTAAAGACAAAGATTCAAAATTACGTAATCTGCAACAGTATCAAGCGCAACTCCAACAGAT
GGAAGCCAATTTTAATCAGCAACTGCAACAGTTGCCGAAAGAAACTGAAATTCCAAGTTTGGTTGAAGACATTAACGTGA
CCGGTGTCAATTCAGGACTCAAGTTTAAAAATATTCGTTTGGAAAATGAGGTCACGCAAGAGTTCTTTATTGAACAGCCG
ATTTCGATTGAAGCGACGGGCGACTATCATGCTTTTGGAATGTTTGTCAGTGGAATAGCAACCTTACCACGTATCGTGAC
CTTGCATGATTTTGTGATTACCGCAACGCAAAATACCGATAAAAAATCGGATATTCCAACAGTCGATTATTCACTCAAAG
CCAAAACATACCGTTATGTAGCTAATGCCAATGATGTTCAGACATCAACACCTGTCAACACTGCAAATACTGGAGAAGCA
CCGCCACCTGCACCAACAACTGAGGAGGTGAAACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8S110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.886

97.619

0.663
  pilO Acinetobacter baumannii D1279779

66.802

98.016

0.655