Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G7045_RS00850 Genome accession   NZ_CP049885
Coordinates   199254..200789 (-) Length   511 a.a.
NCBI ID   WP_166155979.1    Uniprot ID   A0A6G8ACY4
Organism   Acidovorax sp. HDW3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 194254..205789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7045_RS00830 (G7045_00830) - 194287..195072 (-) 786 WP_166155970.1 ABC transporter ATP-binding protein -
  G7045_RS00835 (G7045_00835) - 195087..197012 (-) 1926 WP_166155973.1 long-chain fatty acid--CoA ligase -
  G7045_RS00840 (G7045_00840) - 197203..198357 (-) 1155 WP_166155975.1 ABC transporter substrate-binding protein -
  G7045_RS00845 (G7045_00845) - 198532..199248 (+) 717 WP_166155977.1 Crp/Fnr family transcriptional regulator -
  G7045_RS00850 (G7045_00850) comM 199254..200789 (-) 1536 WP_166155979.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G7045_RS00855 (G7045_00855) rsmI 200808..201740 (-) 933 WP_166155981.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  G7045_RS00860 (G7045_00860) - 201740..202135 (+) 396 WP_166155983.1 YraN family protein -
  G7045_RS00865 (G7045_00865) - 202187..202783 (+) 597 WP_166155985.1 SIS domain-containing protein -
  G7045_RS00870 (G7045_00870) - 202783..203496 (+) 714 WP_166155987.1 BON domain-containing protein -
  G7045_RS00875 (G7045_00875) - 203521..204429 (-) 909 WP_166155989.1 NAD(P)-dependent oxidoreductase -
  G7045_RS00880 (G7045_00880) pilU 204432..205568 (-) 1137 WP_166155991.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53887.54 Da        Isoelectric Point: 8.2281

>NTDB_id=428316 G7045_RS00850 WP_166155979.1 199254..200789(-) (comM) [Acidovorax sp. HDW3]
MSLALVQSRALLGLAAPAVTVEVHLANGLPSFTLVGLAEVEVKEARERVRAALQNAGLEFPNNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIEAARLAGWEFAGELSLSGQLRPVRGALATSLALRRQGEPARLVLPPESAEEAALVPGIEVYSA
RHLLDVVRQLLPTSDASTPTDATDHWQRVPASAPQEPPAGPDLADVKGQGAARRALEIAAAGGHGLLLVGPPGAGKSMLA
ERFAGLLPAMDVEQALESAAIASLAGRFTPAQWMQRPTAHPHHTSSAVALVGGGSPPRPGEISIAHEGVLFLDEFPEFAR
SALEALREPLETGRITIARATQRAEFPARFQLIAAMNPCPCGFAGSPQRPCRCTPEQIARYQGKLSGPLLDRIDLHVEVP
ALPAAELLQHGGGESSSTVRARVAQARERALARQGHANHQLQGQRLDTHLALAPAASHFLQAAATRLGWSARATHRTLRV
ARTIADLAGSPTTETVHVAEAVQYRRVLRGA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=428316 G7045_RS00850 WP_166155979.1 199254..200789(-) (comM) [Acidovorax sp. HDW3]
ATGAGTCTTGCCCTGGTGCAAAGCCGCGCCCTGCTGGGATTGGCGGCGCCTGCCGTCACTGTCGAAGTGCACCTGGCCAA
TGGCCTGCCCAGCTTTACCCTGGTGGGGCTGGCCGAGGTTGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCGCAGCGCTGC
AAAACGCCGGGCTGGAATTTCCGAACAACAAAAAAATCACCGTCAACCTGGCGCCCGCCGATCTGCCCAAAGATTCAGGG
CGCTTTGACCTGCCCATCGCCCTGGGCATCCTCGCCGCCAGCGGACAAATCGAGGCCGCACGCCTGGCCGGTTGGGAGTT
TGCCGGCGAGCTCTCGCTCTCGGGCCAGCTGCGCCCGGTGCGCGGCGCCCTCGCCACCAGCCTGGCACTGCGCCGCCAAG
GCGAACCTGCGCGCCTGGTATTGCCCCCAGAAAGCGCCGAAGAAGCCGCGCTGGTGCCAGGCATCGAGGTGTATAGCGCC
CGCCATCTGCTCGATGTGGTGCGCCAGCTGCTGCCGACAAGCGATGCCAGCACCCCCACCGACGCCACCGACCACTGGCA
ACGCGTACCCGCCAGCGCCCCCCAGGAGCCCCCCGCCGGCCCCGATCTGGCCGACGTCAAAGGCCAGGGCGCAGCACGCC
GGGCACTGGAGATTGCGGCAGCGGGCGGCCACGGTTTGTTGCTCGTGGGGCCGCCAGGCGCTGGAAAATCCATGCTGGCC
GAGCGCTTTGCCGGCCTGCTGCCAGCCATGGACGTGGAGCAGGCACTCGAGAGCGCCGCCATTGCCAGCCTGGCTGGCCG
CTTTACGCCAGCGCAATGGATGCAGCGCCCCACCGCCCACCCCCACCACACCAGCAGTGCCGTGGCCCTGGTCGGCGGTG
GCTCGCCCCCCAGGCCGGGGGAAATTTCCATCGCCCACGAAGGGGTGCTGTTCCTCGATGAATTTCCGGAGTTTGCCCGC
AGCGCCCTCGAAGCCCTGCGCGAACCGCTGGAGACGGGCCGCATCACCATCGCCCGCGCCACGCAGCGCGCCGAATTCCC
GGCGCGCTTTCAACTCATTGCCGCCATGAACCCTTGCCCCTGCGGCTTTGCCGGCAGCCCACAGCGCCCCTGCCGCTGCA
CACCCGAGCAAATTGCCCGCTACCAAGGCAAATTGAGCGGCCCGCTGCTCGACCGCATCGACTTGCACGTCGAAGTCCCG
GCCCTCCCCGCCGCCGAACTGCTGCAACACGGCGGCGGCGAAAGCAGCAGCACGGTGCGCGCCCGGGTGGCGCAAGCGCG
CGAACGGGCCCTGGCACGCCAGGGCCACGCCAACCACCAGCTGCAGGGCCAGCGCCTGGACACCCACCTGGCCCTGGCGC
CTGCTGCCAGCCATTTTTTGCAAGCCGCCGCCACCCGCCTGGGTTGGTCAGCGCGCGCCACCCACCGCACCCTGCGCGTG
GCGCGCACCATCGCCGACCTGGCGGGCAGCCCCACGACCGAGACGGTGCACGTGGCCGAAGCAGTGCAATACCGGCGGGT
ACTGCGCGGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8ACY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.344

100

0.524
  comM Vibrio campbellii strain DS40M4

50.685

100

0.507
  comM Haemophilus influenzae Rd KW20

49.71

100

0.503
  comM Glaesserella parasuis strain SC1401

49.318

100

0.495
  comM Legionella pneumophila str. Paris

47.115

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.115

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.36

100

0.429