Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   G8E09_RS01615 Genome accession   NZ_CP049806
Coordinates   341497..343647 (+) Length   716 a.a.
NCBI ID   WP_167562957.1    Uniprot ID   A0A6H0FQ97
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336497..348647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01595 (G8E09_01595) pilM 338420..339478 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  G8E09_RS01600 (G8E09_01600) pilN 339478..340119 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  G8E09_RS01605 (G8E09_01605) pilO 340116..340895 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8E09_RS01610 (G8E09_01610) pilP 340907..341434 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  G8E09_RS01615 (G8E09_01615) pilQ 341497..343647 (+) 2151 WP_167562957.1 type IV pilus secretin PilQ family protein Machinery gene
  G8E09_RS01620 (G8E09_01620) aroK 343659..344228 (+) 570 WP_016142884.1 shikimate kinase AroK -
  G8E09_RS01625 (G8E09_01625) aroB 344257..345339 (+) 1083 WP_167562958.1 3-dehydroquinate synthase -
  G8E09_RS01630 (G8E09_01630) - 345356..346240 (+) 885 WP_167562959.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 77587.96 Da        Isoelectric Point: 5.4756

>NTDB_id=427968 G8E09_RS01615 WP_167562957.1 341497..343647(+) (pilQ) [Acinetobacter pittii strain A1254]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSVQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYTQAQDIMSLITQGSNNSNGMQRTSDGGNSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSDTTLWNLREPDDDGKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVI
STPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVSGAAPNGELIL
NKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=427968 G8E09_RS01615 WP_167562957.1 341497..343647(+) (pilQ) [Acinetobacter pittii strain A1254]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCATATCAGCTTGAGAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCTATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGTGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACCTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTACACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCGACGCCTGTTTCGACAATTGAATCTTATAATGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTAACCATT
AGCCTCAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTTGCTGATTTTACTGGTATTAATATGGTCGCGGCTGATAGTG
TGCAAGGTAATATCACTTTGCGTTTAAAAGATGTACCATGGGATCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCCGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATACGCAAGCTCAGGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGCAATGGTATGCAGCGCACATCTGATGGTGGAAATTCTACATCTACTAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
TAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACCAAAGAGCTCGGTGTTAAATGGGGTATATTA
TCGCAAGGGATTACCAACAATAATAATTTGTTAGTTGGTGGTAGTGATACAACGCTTTGGAATTTAAGAGAACCAGATGA
CGACGGGAAATACACGATTGAGCGGCCAGATAATTTAAACGTTGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCT
TTGGCTTGATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAAGCTGATGGTTATGGTGAGGTTATT
TCTACCCCTAAAGTAATGACTGCAGATAAACAACCTGCAAAAGTTGCAACAGGTCAACAGGTCCCATATCAAACCACAAC
TAATTCTGCTGCGGGTGCCACAGCAAGTACATCATTTAAAGATGCACTTTTAAGTTTGGATGTTACTCCGAGCATCACGC
CTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAAGATTCGGTTTCGGGTGCGGCTCCTAATGGTGAATTGATCCTA
AATAAAAATAATATCAAGACAAATGTGTTGGTGAATAATGGCGAAACGGTCATTCTTGGTGGTGTTTTTGAGCAGACAAC
CCTTAACTCTCAAACCAAGGTTCCTTTCTTTGGAGACATTCCTGTCGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTG
ATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(40-118)

Bacterial type II and III secretion system protein (Secretin)

(550-708)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0FQ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

91.123

100

0.918
  pilQ Acinetobacter baumannii strain A118

90.985

100

0.916
  comQ Acinetobacter baylyi ADP1

75.348

100

0.756
  pilQ Pseudomonas aeruginosa PAK

39.694

100

0.398