Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   G8E09_RS01605 Genome accession   NZ_CP049806
Coordinates   340116..340895 (+) Length   259 a.a.
NCBI ID   WP_005067082.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335116..345895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01590 (G8E09_01590) ponA 335697..338258 (-) 2562 WP_167562956.1 penicillin-binding protein PBP1a -
  G8E09_RS01595 (G8E09_01595) pilM 338420..339478 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  G8E09_RS01600 (G8E09_01600) pilN 339478..340119 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  G8E09_RS01605 (G8E09_01605) pilO 340116..340895 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8E09_RS01610 (G8E09_01610) pilP 340907..341434 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  G8E09_RS01615 (G8E09_01615) pilQ 341497..343647 (+) 2151 WP_167562957.1 type IV pilus secretin PilQ family protein Machinery gene
  G8E09_RS01620 (G8E09_01620) aroK 343659..344228 (+) 570 WP_016142884.1 shikimate kinase AroK -
  G8E09_RS01625 (G8E09_01625) aroB 344257..345339 (+) 1083 WP_167562958.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29421.52 Da        Isoelectric Point: 5.7456

>NTDB_id=427966 G8E09_RS01605 WP_005067082.1 340116..340895(+) (pilO) [Acinetobacter pittii strain A1254]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNAHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=427966 G8E09_RS01605 WP_005067082.1 340116..340895(+) (pilO) [Acinetobacter pittii strain A1254]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAACAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGTTATATGGGCGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTAATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGCACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.732

86.486

0.776
  comO Acinetobacter baylyi ADP1

71.983

89.575

0.645