Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   G8E09_RS01600 Genome accession   NZ_CP049806
Coordinates   339478..340119 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334478..345119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS01580 (G8E09_01580) - 334522..334854 (+) 333 WP_068563962.1 DUF7709 family protein -
  G8E09_RS01585 (G8E09_01585) rrmA 334857..335681 (+) 825 WP_167562955.1 putative RNA methyltransferase -
  G8E09_RS01590 (G8E09_01590) ponA 335697..338258 (-) 2562 WP_167562956.1 penicillin-binding protein PBP1a -
  G8E09_RS01595 (G8E09_01595) pilM 338420..339478 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  G8E09_RS01600 (G8E09_01600) pilN 339478..340119 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  G8E09_RS01605 (G8E09_01605) pilO 340116..340895 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  G8E09_RS01610 (G8E09_01610) pilP 340907..341434 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  G8E09_RS01615 (G8E09_01615) pilQ 341497..343647 (+) 2151 WP_167562957.1 type IV pilus secretin PilQ family protein Machinery gene
  G8E09_RS01620 (G8E09_01620) aroK 343659..344228 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=427965 G8E09_RS01600 WP_002116944.1 339478..340119(+) (pilN) [Acinetobacter pittii strain A1254]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=427965 G8E09_RS01600 WP_002116944.1 339478..340119(+) (pilN) [Acinetobacter pittii strain A1254]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685