Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   TEH_RS01225 Genome accession   NC_016052
Coordinates   265888..267156 (-) Length   422 a.a.
NCBI ID   WP_041591744.1    Uniprot ID   -
Organism   Tetragenococcus halophilus NBRC 12172     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 260888..272156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TEH_RS01195 (TEH_02470) - 261808..262149 (-) 342 WP_014123644.1 PepSY domain-containing protein -
  TEH_RS01200 (TEH_02480) - 262226..263077 (-) 852 WP_014123645.1 aminoglycoside 6-adenylyltransferase -
  TEH_RS01205 (TEH_02490) pepA 263221..264297 (+) 1077 WP_014123646.1 glutamyl aminopeptidase -
  TEH_RS01210 (TEH_02500) - 264385..264699 (+) 315 WP_014123647.1 thioredoxin family protein -
  TEH_RS01215 (TEH_02510) - 264722..265180 (+) 459 WP_014123648.1 universal stress protein -
  TEH_RS01220 (TEH_02520) ytpR 265233..265844 (+) 612 WP_014123649.1 YtpR family tRNA-binding protein -
  TEH_RS01225 (TEH_02530) htrA 265888..267156 (-) 1269 WP_041591744.1 S1C family serine protease Regulator
  TEH_RS01230 (TEH_02540) rlmH 267498..267977 (+) 480 WP_014123651.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  TEH_RS01235 (TEH_02550) - 268021..268548 (+) 528 WP_014123652.1 hypothetical protein -
  TEH_RS01240 (TEH_02560) msrA 268789..269625 (+) 837 WP_041591745.1 peptide-methionine (S)-S-oxide reductase MsrA -
  TEH_RS01245 (TEH_02570) - 269709..270188 (+) 480 WP_014123654.1 C-GCAxxG-C-C family protein -
  TEH_RS01250 (TEH_02580) - 270192..271124 (+) 933 WP_014123655.1 TDT family transporter -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 43959.72 Da        Isoelectric Point: 3.7200

>NTDB_id=42648 TEH_RS01225 WP_041591744.1 265888..267156(-) (htrA) [Tetragenococcus halophilus NBRC 12172]
MAKKNVTPDSKKGGWIKKFGIGLLGGLIGGLLVIGGFYYFSNGNPFQTNEATSSSGVTDNNDDVQVSDVKVDADSDTTDA
VENVQNAVVSVINLQNSSPQESGGIFGTEQPEGNSEDDEEPAGEGSGVIYKEDGGDAYIVTNNHVVAGQSGLEVVMADGS
REQAELVGTDAYTDLAVLKISSDNVDTVATFGDSDELQVGEPAIAIGSPLGSDYANSVTQGIISSVNRLVSSQNESGEDV
STNAIQTDAAINPGNSGGPLVNAGGQVVGINSSKIASSGQAGVSVEGMGFAIPSNDVTDIINELEENGEIARPALGISML
DLNTIPTEQRQRVLQIPEDVENGVVVENPGDGTPASDAGLEQYDVITKVDDKEVKDSTELRAALYEKSVGDTLKLTFYRQ
DDAQSVNVKLSEDQSIIESNNE

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=42648 TEH_RS01225 WP_041591744.1 265888..267156(-) (htrA) [Tetragenococcus halophilus NBRC 12172]
ATGGCAAAAAAGAATGTAACACCTGATTCTAAAAAAGGCGGGTGGATTAAAAAATTCGGAATTGGCCTATTAGGTGGATT
AATAGGCGGGTTACTTGTCATTGGTGGCTTTTATTATTTTTCTAATGGTAACCCATTTCAAACAAATGAAGCAACTTCTT
CATCTGGCGTAACAGATAATAACGACGACGTACAGGTCAGTGATGTTAAAGTTGATGCCGATAGTGATACCACAGACGCT
GTAGAAAATGTACAAAATGCTGTCGTTTCAGTGATCAATTTACAAAACTCTTCTCCTCAAGAAAGCGGAGGTATTTTTGG
CACCGAGCAACCAGAAGGCAACTCTGAAGACGACGAGGAGCCAGCTGGTGAAGGTAGTGGTGTGATTTACAAAGAAGATG
GCGGCGATGCCTACATTGTAACAAATAATCACGTAGTTGCCGGACAAAGTGGCTTGGAAGTAGTTATGGCAGACGGTAGT
AGAGAACAAGCAGAATTAGTAGGTACTGATGCTTATACTGACTTAGCCGTATTAAAAATTTCTTCTGATAATGTAGACAC
AGTAGCTACATTCGGTGATTCTGATGAATTACAAGTAGGTGAACCAGCGATCGCTATTGGTTCTCCTCTAGGTTCTGATT
ATGCTAATTCAGTAACCCAAGGAATTATTTCTTCAGTCAATCGTTTAGTATCCAGCCAAAATGAATCTGGCGAAGATGTG
AGCACAAATGCTATTCAAACGGACGCTGCAATCAACCCAGGAAATTCTGGCGGGCCATTGGTCAATGCTGGTGGACAAGT
TGTTGGAATTAACTCCAGTAAAATTGCTAGTTCCGGACAAGCTGGCGTAAGTGTTGAAGGCATGGGCTTTGCTATTCCAA
GTAATGATGTAACAGATATTATTAATGAATTGGAAGAAAATGGTGAAATTGCTCGTCCAGCGTTAGGCATCTCCATGCTT
GATTTAAATACCATTCCTACAGAACAAAGACAACGTGTTTTACAAATCCCTGAGGATGTAGAAAACGGCGTTGTTGTAGA
AAACCCTGGCGATGGCACACCAGCAAGTGATGCAGGATTAGAACAATATGATGTTATTACAAAAGTTGACGATAAAGAAG
TAAAAGATTCTACTGAGCTACGTGCCGCTTTATATGAAAAATCAGTAGGAGATACTTTGAAATTGACTTTTTATCGACAA
GATGACGCACAATCTGTAAATGTTAAACTATCAGAAGATCAATCAATCATTGAAAGCAACAACGAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(125-270)

PDZ domain (PDZ_2)

(313-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

58.659

84.834

0.498
  htrA Streptococcus mitis NCTC 12261

50

92.417

0.462
  htrA Streptococcus gordonii str. Challis substr. CH1

49.49

92.891

0.46
  htrA Streptococcus pneumoniae TIGR4

49.487

92.417

0.457
  htrA Streptococcus pneumoniae D39

49.487

92.417

0.457
  htrA Streptococcus pneumoniae Rx1

49.487

92.417

0.457
  htrA Streptococcus pneumoniae R6

49.487

92.417

0.457

Multiple sequence alignment