Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   G4V55_RS01405 Genome accession   NZ_CP048893
Coordinates   280095..280898 (-) Length   267 a.a.
NCBI ID   WP_203004368.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH240     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 275095..285898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V55_RS01395 - 277499..277774 (-) 276 WP_153707850.1 hypothetical protein -
  G4V55_RS01400 comA 277806..280025 (+) 2220 WP_010359837.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G4V55_RS01405 comL 280095..280898 (-) 804 WP_203004368.1 outer membrane protein assembly factor BamD Machinery gene
  G4V55_RS01410 rluD 280897..282021 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  G4V55_RS01415 - 282174..283121 (-) 948 Protein_281 bile acid:sodium symporter family protein -
  G4V55_RS01420 - 283198..283422 (-) 225 WP_225577482.1 hypothetical protein -
  G4V55_RS01425 pgeF 283575..284354 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  G4V55_RS01430 lptE 284406..284885 (+) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  G4V55_RS01435 holA 284887..285885 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30785.85 Da        Isoelectric Point: 8.7197

>NTDB_id=423799 G4V55_RS01405 WP_203004368.1 280095..280898(-) (comL) [Neisseria gonorrhoeae strain SRRSH240]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKCGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=423799 G4V55_RS01405 WP_203004368.1 280095..280898(-) (comL) [Neisseria gonorrhoeae strain SRRSH240]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGACCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAATGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

99.625

100

0.996
  comL Neisseria meningitidis MC58

95.88

100

0.959