NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	IHE41_RS12980	Genome accession	NZ_CP062153
Coordinates	2790249..2791253 (-)	Length	334 a.a.
NCBI ID	WP_079856737.1	Uniprot ID	-
Organism	Vibrio parahaemolyticus strain 17-VB00214
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2785249..2796253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHE41_RS12970 (IHE41_12945)	-	2785438..2787849 (-)	2412	WP_005378979.1	hypothetical protein	-
IHE41_RS12975 (IHE41_12950)	-	2787843..2790191 (-)	2349	WP_005378978.1	hypothetical protein	-
IHE41_RS12980 (IHE41_12955)	comM	2790249..2791253 (-)	1005	WP_079856737.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
IHE41_RS12985 (IHE41_12960)	ilvG	2791718..2793364 (+)	1647	WP_005461385.1	acetolactate synthase 2 catalytic subunit	-
IHE41_RS12990 (IHE41_12965)	ilvM	2793375..2793659 (+)	285	WP_005378958.1	acetolactate synthase 2 small subunit	-
IHE41_RS12995 (IHE41_12970)	ilvE	2793672..2794610 (+)	939	WP_025578093.1	branched-chain-amino-acid transaminase	-

Sequence

Protein

Download Length: 334 a.a. Molecular weight: 36164.66 Da Isoelectric Point: 8.7215

                                >NTDB_id=423799 IHE41_RS12980 WP_079856737.1 2790249..2791253(-) (comM) [Vibrio parahaemolyticus strain 17-VB00214]

MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR

FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL

LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD

EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDETQKISMIETYQFFINLL

NHMNFMIKKIHFLH

Nucleotide

Download Length: 1005 bp

                                >NTDB_id=423799 IHE41_RS12980 WP_079856737.1 2790249..2791253(-) (comM) [Vibrio parahaemolyticus strain 17-VB00214]

ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA

TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA

TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT

TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT

TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGCAAAGTCGGAC

GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA

CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA

TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC

TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAT

GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT

TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCAGGTGAGATTTCTTTGG

CTCACAATGGGTTATTGTTCCTTGATGAAACTCAGAAAATCTCAATGATTGAAACATATCAATTCTTTATTAACTTATTG

AACCATATGAATTTTATGATTAAAAAAATCCATTTTTTACATTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-308)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	95.38	90.719	0.865
comM	Vibrio cholerae O1 biovar El Tor strain E7946	85.149	90.719	0.772
comM	Vibrio cholerae strain A1552	85.149	90.719	0.772
comM	Haemophilus influenzae Rd KW20	67.101	91.916	0.617
comM	Glaesserella parasuis strain SC1401	65.359	91.617	0.599
comM	Legionella pneumophila str. Paris	54.125	90.719	0.491
comM	Legionella pneumophila strain ERS1305867	54.125	90.719	0.491
comM	Acinetobacter baylyi ADP1	52.145	90.719	0.473
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.66	92.515	0.413

Detailed information NTG0423799