Detailed information NTG0423712

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: IF561_RS13325
• Genome accession: NZ_CP062150
• Coordinates: 2829311..2830315 (-)
• Length: 334 a.a.
• NCBI ID: WP_079856737.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 19-VB00998
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2824311..2835315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF561_RS13315 (IF561_13305)	-	2824500..2826911 (-)	2412	WP_005378979.1	hypothetical protein	-
IF561_RS13320 (IF561_13310)	-	2826905..2829253 (-)	2349	WP_005378978.1	hypothetical protein	-
IF561_RS13325 (IF561_13315)	comM	2829311..2830315 (-)	1005	WP_079856737.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
IF561_RS13330 (IF561_13320)	ilvG	2830780..2832426 (+)	1647	WP_005461385.1	acetolactate synthase 2 catalytic subunit	-
IF561_RS13335 (IF561_13325)	ilvM	2832437..2832721 (+)	285	WP_005378958.1	acetolactate synthase 2 small subunit	-
IF561_RS13340 (IF561_13330)	ilvE	2832734..2833672 (+)	939	WP_025578093.1	branched-chain-amino-acid transaminase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36164.66 Da
• Isoelectric Point: 8.7215

>NTDB_id=423712 IF561_RS13325 WP_079856737.1 2829311..2830315(-) (comM) [Vibrio parahaemolyticus strain 19-VB00998]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDETQKISMIETYQFFINLL
NHMNFMIKKIHFLH

Nucleotide

• Length: 1005 bp

>NTDB_id=423712 IF561_RS13325 WP_079856737.1 2829311..2830315(-) (comM) [Vibrio parahaemolyticus strain 19-VB00998]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGCAAAGTCGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAT
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCAGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAACTCAGAAAATCTCAATGATTGAAACATATCAATTCTTTATTAACTTATTG
AACCATATGAATTTTATGATTAAAAAAATCCATTTTTTACATTGA

Domains

Predicted by InterProScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-308)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	95.38	90.719	0.865
comM	Vibrio cholerae O1 biovar El Tor strain E7946	85.149	90.719	0.772
comM	Vibrio cholerae strain A1552	85.149	90.719	0.772
comM	Haemophilus influenzae Rd KW20	67.101	91.916	0.617
comM	Glaesserella parasuis strain SC1401	65.359	91.617	0.599
comM	Legionella pneumophila str. Paris	54.125	90.719	0.491
comM	Legionella pneumophila strain ERS1305867	54.125	90.719	0.491
comM	Acinetobacter baylyi ADP1	52.145	90.719	0.473
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.66	92.515	0.413