Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AbD4_RS18280 Genome accession   NZ_CP048849
Coordinates   3822636..3823277 (-) Length   213 a.a.
NCBI ID   WP_000201221.1    Uniprot ID   A0A5P1AXR1
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3817636..3828277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS18260 (AbD4_03682) aroK 3818552..3819121 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AbD4_RS18265 (AbD4_03683) pilQ 3819133..3821298 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AbD4_RS18270 (AbD4_03684) pilP 3821361..3821888 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  AbD4_RS18275 (AbD4_03685) pilO 3821899..3822639 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AbD4_RS18280 (AbD4_03686) pilN 3822636..3823277 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  AbD4_RS18285 (AbD4_03687) pilM 3823277..3824335 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AbD4_RS18290 (AbD4_03688) ponA 3824497..3827052 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AbD4_RS18295 (AbD4_03689) - 3827070..3827894 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  AbD4_RS18300 (AbD4_03690) - 3827897..3828229 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24023.34 Da        Isoelectric Point: 5.3968

>NTDB_id=423522 AbD4_RS18280 WP_000201221.1 3822636..3823277(-) (pilN) [Acinetobacter baumannii strain D4]
MATINLLPWREELREQRKKQFITFCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=423522 AbD4_RS18280 WP_000201221.1 3822636..3823277(-) (pilN) [Acinetobacter baumannii strain D4]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTTTGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1AXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

73.077

97.653

0.714