Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AbD4_RS18275 Genome accession   NZ_CP048849
Coordinates   3821899..3822639 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3816899..3827639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS18255 (AbD4_03681) aroB 3817441..3818523 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  AbD4_RS18260 (AbD4_03682) aroK 3818552..3819121 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AbD4_RS18265 (AbD4_03683) pilQ 3819133..3821298 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AbD4_RS18270 (AbD4_03684) pilP 3821361..3821888 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  AbD4_RS18275 (AbD4_03685) pilO 3821899..3822639 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AbD4_RS18280 (AbD4_03686) pilN 3822636..3823277 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  AbD4_RS18285 (AbD4_03687) pilM 3823277..3824335 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AbD4_RS18290 (AbD4_03688) ponA 3824497..3827052 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=423521 AbD4_RS18275 WP_000076101.1 3821899..3822639(-) (pilO) [Acinetobacter baumannii strain D4]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=423521 AbD4_RS18275 WP_000076101.1 3821899..3822639(-) (pilO) [Acinetobacter baumannii strain D4]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683