Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AbD4_RS18270 Genome accession   NZ_CP048849
Coordinates   3821361..3821888 (-) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3816361..3826888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS18250 (AbD4_03680) - 3816550..3817425 (-) 876 WP_000218813.1 hypothetical protein -
  AbD4_RS18255 (AbD4_03681) aroB 3817441..3818523 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  AbD4_RS18260 (AbD4_03682) aroK 3818552..3819121 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AbD4_RS18265 (AbD4_03683) pilQ 3819133..3821298 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AbD4_RS18270 (AbD4_03684) pilP 3821361..3821888 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  AbD4_RS18275 (AbD4_03685) pilO 3821899..3822639 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AbD4_RS18280 (AbD4_03686) pilN 3822636..3823277 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  AbD4_RS18285 (AbD4_03687) pilM 3823277..3824335 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=423520 AbD4_RS18270 WP_000695061.1 3821361..3821888(-) (pilP) [Acinetobacter baumannii strain D4]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=423520 AbD4_RS18270 WP_000695061.1 3821361..3821888(-) (pilP) [Acinetobacter baumannii strain D4]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714