Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3580_RS20415 Genome accession   NZ_CP048836
Coordinates   3978455..3978757 (-) Length   100 a.a.
NCBI ID   WP_323847986.1    Uniprot ID   -
Organism   Nitrogeniibacter mangrovi strain M9-3-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3973455..3983757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3580_RS18340 (G3580_18345) - 3977565..3977861 (+) 297 WP_173767973.1 helix-turn-helix transcriptional regulator -
  G3580_RS20415 comM 3978455..3978757 (-) 303 WP_323847986.1 ATP-binding protein Machinery gene
  G3580_RS18345 (G3580_18350) comM 3978736..3979317 (-) 582 WP_323847987.1 magnesium chelatase domain-containing protein Machinery gene
  G3580_RS18350 (G3580_18355) dusA 3979384..3980433 (-) 1050 WP_173767975.1 tRNA dihydrouridine(20/20a) synthase DusA -
  G3580_RS18355 (G3580_18360) - 3980448..3980711 (-) 264 WP_173767977.1 accessory factor UbiK family protein -
  G3580_RS18360 (G3580_18365) - 3981025..3981741 (+) 717 WP_173767978.1 TorF family putative porin -
  G3580_RS18365 (G3580_18370) - 3981791..3982129 (+) 339 WP_173767980.1 P-II family nitrogen regulator -
  G3580_RS18370 (G3580_18375) - 3982144..3983451 (+) 1308 WP_173767983.1 ammonium transporter -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10328.71 Da        Isoelectric Point: 6.8681

>NTDB_id=423456 G3580_RS20415 WP_323847986.1 3978455..3978757(-) (comM) [Nitrogeniibacter mangrovi strain M9-3-2]
MPDLADVKGQLEARRALEVAAAGGHSLLFFGAPGTGKSMLAQRLPGILPPMTEDEALASAAVQSLTAGFDVTGWGRRAYR
SPHHSSSVAAVIGGGCEFHQ

Nucleotide


Download         Length: 303 bp        

>NTDB_id=423456 G3580_RS20415 WP_323847986.1 3978455..3978757(-) (comM) [Nitrogeniibacter mangrovi strain M9-3-2]
ATGCCCGATCTGGCCGACGTGAAGGGACAGCTCGAAGCCCGCCGGGCCCTCGAAGTGGCGGCCGCCGGGGGGCATTCCCT
GCTCTTTTTCGGCGCGCCGGGGACCGGCAAGTCCATGCTCGCCCAGCGCCTGCCCGGCATCCTGCCGCCCATGACCGAGG
ACGAGGCGCTGGCCTCGGCGGCGGTGCAGTCCCTGACCGCGGGTTTCGACGTCACCGGCTGGGGGCGGCGCGCCTACCGC
TCGCCCCATCATTCCTCGTCGGTGGCCGCGGTGATCGGCGGCGGCTGTGAATTCCATCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(3-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.319

94

0.52
  comM Haemophilus influenzae Rd KW20

53.684

95

0.51
  comM Vibrio cholerae strain A1552

54.255

94

0.51
  comM Glaesserella parasuis strain SC1401

53.191

94

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.474

95

0.47
  comM Legionella pneumophila str. Paris

44.681

94

0.42
  comM Legionella pneumophila strain ERS1305867

44.681

94

0.42