Detailed information NTG0423456

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: IE382_RS06510
• Genome accession: NZ_CP061870
• Coordinates: 1250331..1251503 (+)
• Length: 390 a.a.
• NCBI ID: WP_129134239.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain FX-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1245331..1256503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IE382_RS06485 (IE382_06445)	-	1245591..1245917 (+)	327	WP_014662881.1	YddF family protein	-
IE382_RS06490 (IE382_06450)	-	1245921..1248164 (+)	2244	WP_242304549.1	hypothetical protein	-
IE382_RS06495 (IE382_06455)	cwlT	1248161..1249150 (+)	990	WP_043857174.1	bifunctional lytic transglycosylase/C40 family peptidase	-
IE382_RS06500 (IE382_06460)	-	1249165..1249671 (+)	507	WP_043857175.1	hypothetical protein	-
IE382_RS06505 (IE382_06465)	-	1249767..1250117 (+)	351	WP_031600319.1	cystatin-like fold lipoprotein	-
IE382_RS06510 (IE382_06470)	rapF	1250331..1251503 (+)	1173	WP_129134239.1	Rap family tetratricopeptide repeat protein	Regulator
IE382_RS06515 (IE382_06475)	-	1251775..1252221 (-)	447	WP_041052807.1	hypothetical protein	-
IE382_RS06520 (IE382_06480)	-	1252371..1252862 (+)	492	WP_017695410.1	YhcN/YlaJ family sporulation lipoprotein	-
IE382_RS06525 (IE382_06490)	yhcQ	1253882..1254543 (-)	662	Protein_1218	spore coat protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 46209.74 Da
• Isoelectric Point: 6.0438

>NTDB_id=423456 IE382_RS06510 WP_129134239.1 1250331..1251503(+) (rapF) [Bacillus subtilis strain FX-1]
MRGVLDKDKIPYDVVTKKLNEWYTHIKNDDLEKAKQIKKEVEEDLKKMEESKDALLYYQLLEFRHELLVNYMNSEKTEEL
KSSYLAMKKLEDQGNVTGMLEYYFHFFMGMYEFRRKKLTAAITSYRKAEAKLREVDDEIEKAEFFFKVSYVYYYMKQTYF
SLNYAYRALEIYQRYDDYFIQRLRCQFVLGGNFIDSLEYEKALDTFMEALKIAEEIKIDYLIGMAHINIGICFDELKDYK
NASSHLKKALDLLEVSDHSFVAKTLFILTHVKIKQGDKESAGVYFQKGHEFVKKTNDAEYNAKFKILEGLYFSNGEYELI
SEAFAYFDSMKMYADLENYAVEVAQFFHRKQDFQRSSEYYMLSVEARNKIKKGEIINETQSGHIGSSGVN

Nucleotide

• Length: 1173 bp

>NTDB_id=423456 IE382_RS06510 WP_129134239.1 1250331..1251503(+) (rapF) [Bacillus subtilis strain FX-1]
TTGCGAGGTGTTTTAGATAAAGATAAAATTCCATATGATGTAGTTACAAAAAAATTAAACGAATGGTACACCCATATAAA
AAATGATGATCTTGAAAAAGCTAAACAAATAAAAAAAGAAGTTGAAGAAGATCTAAAAAAAATGGAAGAAAGTAAAGATG
CTTTACTATATTATCAATTGCTTGAATTCCGCCACGAATTGTTGGTCAATTACATGAATTCAGAAAAGACAGAAGAGTTG
AAAAGTTCATATCTAGCTATGAAAAAATTGGAGGACCAGGGCAATGTTACTGGAATGTTGGAATATTATTTTCATTTCTT
TATGGGGATGTATGAATTCAGAAGAAAAAAACTAACTGCGGCAATAACTTCATATAGAAAAGCAGAAGCTAAATTAAGAG
AAGTAGATGATGAGATTGAAAAAGCAGAATTCTTTTTTAAAGTATCATATGTTTATTACTATATGAAGCAAACATACTTT
TCGCTTAACTATGCCTATAGAGCTCTTGAAATATATCAAAGGTATGATGATTATTTTATACAGAGATTAAGATGTCAATT
TGTATTAGGTGGAAACTTTATTGACTCCCTAGAATATGAAAAGGCATTGGATACATTTATGGAAGCGTTAAAAATTGCTG
AAGAAATTAAAATTGATTATTTAATTGGGATGGCACACATCAACATAGGTATTTGCTTTGATGAGTTAAAAGATTACAAA
AATGCATCAAGTCATCTAAAAAAGGCGTTGGATTTGTTAGAGGTTAGCGATCACAGTTTTGTTGCGAAAACTCTTTTTAT
TTTAACACATGTAAAGATCAAGCAAGGTGACAAAGAATCAGCTGGTGTCTATTTTCAAAAAGGACATGAGTTCGTAAAAA
AAACAAATGACGCTGAATATAATGCTAAATTTAAAATATTAGAAGGACTTTATTTTTCAAATGGTGAATATGAATTGATT
AGTGAGGCTTTTGCATATTTTGATTCAATGAAAATGTATGCAGATTTAGAGAACTATGCTGTTGAAGTGGCGCAATTTTT
TCACCGAAAACAGGATTTTCAACGCTCAAGTGAATATTATATGTTGAGTGTTGAAGCAAGAAACAAAATTAAAAAAGGAG
AGATTATTAATGAAACTCAGTCGGGTCATATTGGCAGTAGCGGTGTTAACTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (198-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (9-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.095	96.923	0.369