Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3580_RS18345 Genome accession   NZ_CP048836
Coordinates   3978736..3979317 (-) Length   193 a.a.
NCBI ID   WP_323847987.1    Uniprot ID   -
Organism   Nitrogeniibacter mangrovi strain M9-3-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3973736..3984317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3580_RS18340 (G3580_18345) - 3977565..3977861 (+) 297 WP_173767973.1 helix-turn-helix transcriptional regulator -
  G3580_RS20415 comM 3978455..3978757 (-) 303 WP_323847986.1 ATP-binding protein Machinery gene
  G3580_RS18345 (G3580_18350) comM 3978736..3979317 (-) 582 WP_323847987.1 magnesium chelatase domain-containing protein Machinery gene
  G3580_RS18350 (G3580_18355) dusA 3979384..3980433 (-) 1050 WP_173767975.1 tRNA dihydrouridine(20/20a) synthase DusA -
  G3580_RS18355 (G3580_18360) - 3980448..3980711 (-) 264 WP_173767977.1 accessory factor UbiK family protein -
  G3580_RS18360 (G3580_18365) - 3981025..3981741 (+) 717 WP_173767978.1 TorF family putative porin -
  G3580_RS18365 (G3580_18370) - 3981791..3982129 (+) 339 WP_173767980.1 P-II family nitrogen regulator -
  G3580_RS18370 (G3580_18375) - 3982144..3983451 (+) 1308 WP_173767983.1 ammonium transporter -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20542.75 Da        Isoelectric Point: 10.6977

>NTDB_id=423455 G3580_RS18345 WP_323847987.1 3978736..3979317(-) (comM) [Nitrogeniibacter mangrovi strain M9-3-2]
MSLAIVHTRALDGMAAPPVIVEVHLANGLPAFSLVGLPDTEVREARDRVRAAIQTSQFEFPARRITVNLAPADLPKESGR
FDLAIALGILAASDQIQPAALDGYEFAGELSLTGQLRPVRGALAMALKTRDAGRALILPGASAREAALVRDARVFSADSL
LAVVAHLNGHEGLTPPAPPSARRRRRRCPIWPT

Nucleotide


Download         Length: 582 bp        

>NTDB_id=423455 G3580_RS18345 WP_323847987.1 3978736..3979317(-) (comM) [Nitrogeniibacter mangrovi strain M9-3-2]
ATGAGTCTTGCCATCGTCCACACCCGTGCCCTCGACGGCATGGCCGCGCCGCCGGTCATCGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCGCGTTCTCGCTGGTGGGGCTGCCCGACACCGAGGTGCGCGAGGCGCGCGACCGGGTGCGCGCCGCGATCC
AGACCAGCCAGTTCGAGTTTCCCGCCCGGCGCATCACCGTCAATCTCGCCCCGGCCGACCTGCCCAAGGAGAGCGGGCGC
TTCGATCTGGCCATCGCGCTGGGCATTCTCGCCGCCTCGGACCAGATCCAGCCGGCCGCGCTCGACGGCTACGAATTCGC
CGGCGAGCTGTCGCTCACCGGCCAGCTGCGCCCGGTGCGCGGTGCCCTGGCCATGGCCCTCAAGACCCGCGACGCCGGGC
GCGCACTGATCCTGCCCGGGGCCAGCGCCCGCGAAGCGGCCCTGGTGCGCGATGCCCGGGTGTTCAGCGCCGACAGCCTG
CTGGCCGTGGTTGCCCATCTGAACGGTCACGAGGGTCTGACGCCGCCGGCGCCCCCGAGCGCGAGGCGACGCCGGCGGCG
ATGCCCGATCTGGCCGACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.345

90.155

0.544
  comM Vibrio campbellii strain DS40M4

56.593

94.301

0.534
  comM Haemophilus influenzae Rd KW20

57.225

89.637

0.513
  comM Legionella pneumophila strain ERS1305867

51.111

93.264

0.477
  comM Legionella pneumophila str. Paris

51.111

93.264

0.477
  comM Glaesserella parasuis strain SC1401

53.179

89.637

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

37.696

98.964

0.373